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来自一块陈旧、干燥的人胰岛素T(6)晶体的经验教训。

Lessons from an aged, dried crystal of T(6) human insulin.

作者信息

Smith G David, Blessing Robert H

机构信息

Structural Biology and Biochemistry, Hospital for Sick Children, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada.

出版信息

Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1384-94. doi: 10.1107/s090744490301165x. Epub 2003 Jul 23.

Abstract

The structure of the T(6) hexameric form of human insulin has been determined at both room temperature and 100 K from a single air-dried crystal. At 100 K, the space group is R3 and the asymmetric unit consists of a dimer, as has been observed previously in hydrated structures. At room temperature, the space group is P1 and the unit cell contains a quasi-threefold-symmetric hexamer. In the absence of stabilizing water interactions, the N-termini of all six A chains in the room-temperature structure appear to have undergone partial unfolding, but the N-termini of these chains are well ordered in the 100 K structure. Other differences between the room-temperature and 100 K structures involve the coordination around the zinc ions. At 100 K, both zinc ions clearly exhibit dual coordination: zinc is octahedrally coordinated in one half of the zinc sites but tetrahedrally coordinated in the other half; at room temperature, the electron densities suggest tetrahedral coordination but the bond distances to the fourth ligands are longer than expected. Contrary to what has been observed to date in all other T(6) insulin structures, there are no contacts between pairs of GluB13 residues, either at room temperature or at 100 K, that would suggest the presence of a hydrogen bond. At room temperature, three of the six independent GluB13 side chains are disordered; at 100 K, both independent side chains are disordered. The disorder in the GluB13 side chains and the lack of contacts between carboxylate groups suggests that as a result of disruption of the hydration structure in the central core of the hexamer, all six B13 carboxylates bear a negative charge. This in turn suggests that in the hydrated structures the well ordered water structure in the central core is involved in stabilizing the B13 side-chain conformations and modulating charge repulsions among the six B13 glutamates if they are not protonated, or that, as is considered more likely, the water structure plays an important role in modulating the pK(a) values of the B13 glutamates, resulting in protonation and hydrogen-bond formation.

摘要

已从单个空气干燥晶体在室温及100 K下确定了人胰岛素T(6)六聚体形式的结构。在100 K时,空间群为R3,不对称单元由一个二聚体组成,这与之前在水合结构中观察到的情况相同。在室温下,空间群为P1,晶胞包含一个准三重对称六聚体。在没有稳定水相互作用的情况下,室温结构中所有六条A链的N端似乎都发生了部分解折叠,但这些链的N端在100 K结构中排列良好。室温结构和100 K结构之间的其他差异涉及锌离子周围的配位情况。在100 K时,两个锌离子都明显表现出双重配位:锌在一半的锌位点以八面体配位,但在另一半以四面体配位;在室温下,电子密度表明是四面体配位,但到第四个配体的键长比预期的长。与迄今为止在所有其他T(6)胰岛素结构中观察到的情况相反,无论是在室温还是100 K下,GluB13残基对之间都没有接触表明存在氢键。在室温下,六个独立的GluB13侧链中有三个是无序的;在100 K时,两个独立的侧链都是无序的。GluB13侧链的无序以及羧基之间缺乏接触表明,由于六聚体中心核心水化结构的破坏,所有六个B13羧酸盐都带有负电荷。这反过来表明,在水合结构中,中心核心中排列良好的水结构参与稳定B13侧链构象,并调节六个B13谷氨酸盐之间的电荷排斥(如果它们没有质子化),或者,更有可能的是,水结构在调节B13谷氨酸盐的pK(a)值方面起重要作用,导致质子化和氢键形成。

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