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包含CDP/cut的转录因子复合物与海胆四疣黑星海胆早期组蛋白H3基因启动子的发育调控相互作用与染色质结构和基因表达的变化相关。

Developmentally-regulated interaction of a transcription factor complex containing CDP/cut with the early histone H3 gene promoter of the sea urchin Tetrapygus niger is associated with changes in chromatin structure and gene expression.

作者信息

Medina R, Paredes R, Puchi M, Imschenetzky M, Montecino M

机构信息

Departamento de Biologia Molecular, Facultad de Ciencias Biologicas, Universidad de Concepcion, Casilla 160-C, Concepcion, Chile.

出版信息

Gene. 2001 Jul 11;272(1-2):237-48. doi: 10.1016/s0378-1119(01)00534-0.

DOI:10.1016/s0378-1119(01)00534-0
PMID:11470530
Abstract

During sea urchin embryogenesis the early histone genes are temporally expressed to accommodate the high demand for histone proteins during DNA replication at early cleavage stages of development. The early histone genes are transcriptionally active from the 16-cell stage, reaching a peak in expression at the 128-cell stage that gradually decreases until expression is completely inhibited at the late blastula stage. We are studying the gene regulatory mechanisms that control early histone gene expression in sea urchins to understand the interrelationships between chromatin remodeling and transcriptional activation during development. Here, we have investigated chromatin organization and transcription factor interactions by analyzing nuclease hypersensitivity and protein binding in the promoter region of the early histone H3 gene from the sea urchin Tetrapygus niger. We have found a DNase I hypersensitive domain centered at -90 in the early histone H3 gene promoter which is only detected in embryos at the 128-cell stage expressing high levels of early histone H3 mRNA. This hypersensitive site (-110 to -70) encompasses two regulatory elements (TnH3NFH3.1 and TnH3CCAAT). The -94 to -77 region of the histone H3 promoter is recognized by a transcription factor complex in nuclear extracts from 128-cell embryos. Methylation interference analysis and competition studies demonstrated a specific interaction at the CCAAT sequence. Using specific antibodies we find that the homeodomain transcription factor CDP/cut is the DNA-binding component of the complex interacting with the early histone H3 gene promoter in T. niger. Our results provide further evidence for the functional role of CDP/cut in developmental regulation of histone gene expression in phylogenetically diverse eukaryotic species.

摘要

在海胆胚胎发育过程中,早期组蛋白基因在发育的早期卵裂阶段进行DNA复制时,会随着时间的推移表达,以满足对组蛋白的高需求。早期组蛋白基因从16细胞阶段开始转录活跃,在128细胞阶段达到表达峰值,随后逐渐下降,直到在囊胚后期表达完全被抑制。我们正在研究控制海胆早期组蛋白基因表达的基因调控机制,以了解发育过程中染色质重塑与转录激活之间的相互关系。在此,我们通过分析来自黑四角海胆早期组蛋白H3基因启动子区域的核酸酶超敏感性和蛋白质结合,研究了染色质组织和转录因子相互作用。我们发现在早期组蛋白H3基因启动子中,一个以-90为中心的DNase I超敏感区域,该区域仅在表达高水平早期组蛋白H3 mRNA的128细胞阶段胚胎中检测到。这个超敏感位点(-110至-70)包含两个调控元件(TnH3NFH3.1和TnH3CCAAT)。组蛋白H3启动子的-94至-77区域被128细胞胚胎核提取物中的转录因子复合物识别。甲基化干扰分析和竞争研究表明在CCAAT序列处存在特异性相互作用。使用特异性抗体,我们发现同源域转录因子CDP/cut是与黑四角海胆早期组蛋白H3基因启动子相互作用的复合物的DNA结合成分。我们的结果为CDP/cut在系统发育上不同的真核生物物种中组蛋白基因表达的发育调控中的功能作用提供了进一步证据。

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Developmentally-regulated interaction of a transcription factor complex containing CDP/cut with the early histone H3 gene promoter of the sea urchin Tetrapygus niger is associated with changes in chromatin structure and gene expression.包含CDP/cut的转录因子复合物与海胆四疣黑星海胆早期组蛋白H3基因启动子的发育调控相互作用与染色质结构和基因表达的变化相关。
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The homeodomain transcription factor CDP/cut interacts with the cell cycle regulatory element of histone H4 genes packaged into nucleosomes.同源结构域转录因子CDP/cut与包装成核小体的组蛋白H4基因的细胞周期调控元件相互作用。
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Modulator factor-binding sequence of the sea urchin early histone H2A promoter acts as an enhancer element.海胆早期组蛋白H2A启动子的调节因子结合序列作为增强子元件发挥作用。
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Repressor elements in the coding region of the human histone H4 gene interact with the transcription factor CDP/cut.人类组蛋白H4基因编码区的阻遏元件与转录因子CDP/cut相互作用。
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CDP/cut is the DNA-binding subunit of histone gene transcription factor HiNF-D: a mechanism for gene regulation at the G1/S phase cell cycle transition point independent of transcription factor E2F.CDP/cut是组蛋白基因转录因子HiNF-D的DNA结合亚基:一种在G1/S期细胞周期转换点独立于转录因子E2F进行基因调控的机制。
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The five cleavage-stage (CS) histones of the sea urchin are encoded by a maternally expressed family of replacement histone genes: functional equivalence of the CS H1 and frog H1M (B4) proteins.海胆的五种卵裂期(CS)组蛋白由一个母源表达的替代组蛋白基因家族编码:CS H1和青蛙H1M(B4)蛋白的功能等效性。
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引用本文的文献

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Promoter activity of the sea urchin (Paracentrotus lividus) nucleosomal H3 and H2A and linker H1 {alpha}-histone genes is modulated by enhancer and chromatin insulator.海洋海胆(Paracentrotus lividus)核小体 H3 和 H2A 以及连接组蛋白 H1{alpha}基因的启动子活性受增强子和染色质绝缘子调节。
Nucleic Acids Res. 2009 Dec;37(22):7407-15. doi: 10.1093/nar/gkp859.