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琥珀酸纤维杆菌1,3-1,4-β-D-葡聚糖酶的结晶及初步X射线衍射分析

Crystallization and preliminary X-ray diffraction analysis of the 1,3-1,4-beta-D-glucanase from Fibrobacter succinogenes.

作者信息

Tsai L C, Shyur L F, Lin S S, Yuan H S

机构信息

Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan.

出版信息

Acta Crystallogr D Biol Crystallogr. 2001 Sep;57(Pt 9):1303-6. doi: 10.1107/s0907444901010381. Epub 2001 Aug 23.

Abstract

The truncated 1,3-1,4-beta-glucanase (1,3-1,4-beta-D-glucan 4-glucanohydrolase; E.C. 3.2.1.73) from Fibrobacter succinogenes was crystallized in four different forms by the vapour-diffusion method. Form A crystals have the largest trigonal P321 unit cell, diffracting to 3.0 A resolution with four to six molecules per asymmetric unit. Form B and C crystals belong to the same monoclinic space group P2(1), but the form B unit cell is twice as large as the unit cell of form C. Form B crystals diffract to 2.5 A resolution and contain four molecules per asymmetric unit. Form C crystals diffract to 2.1 A resolution and contain two molecules per asymmetric unit. Form D crystals have the smallest orthorhombic P2(1)2(1)2(1) unit cell, containing only one molecule per asymmetric unit, and diffract beyond 2.1 A resolution. The crystallization conditions for form B and C crystals are almost identical, except that form C crystals were grown in the presence of 2 mM Ca(2+) ions. It is likely that Ca(2+) directly binds to the glucanase, leading to unit-cell shrinkage as observed in other Bacillus glucanase crystals. A self-rotation search identified non-crystallographic twofold axes that combine with the crystallographic twofold dyads to give 222 symmetry for both form A and form B crystals, indicating that the glucanase has a tendency to pack in 222 symmetry.

摘要

通过气相扩散法,将来自琥珀酸丝状杆菌的截短型1,3 - 1,4-β-葡聚糖酶(1,3 - 1,4-β-D-葡聚糖4-葡聚糖水解酶;E.C. 3.2.1.73)结晶为四种不同形式。A型晶体具有最大的三方P321晶胞,衍射分辨率为3.0 Å,每个不对称单元中有四到六个分子。B型和C型晶体属于同一单斜空间群P2(1),但B型晶胞是C型晶胞的两倍大。B型晶体衍射分辨率为2.5 Å,每个不对称单元包含四个分子。C型晶体衍射分辨率为2.1 Å,每个不对称单元包含两个分子。D型晶体具有最小的正交P2(1)2(1)2(1)晶胞,每个不对称单元仅包含一个分子,衍射分辨率超过2.1 Å。B型和C型晶体的结晶条件几乎相同,只是C型晶体是在2 mM Ca(2+)离子存在下生长的。Ca(2+)可能直接与葡聚糖酶结合,导致晶胞收缩,正如在其他芽孢杆菌葡聚糖酶晶体中观察到的那样。自旋转搜索确定了非晶体学二重轴,其与晶体学二重轴结合,使A型和B型晶体都具有222对称性,这表明葡聚糖酶倾向于以222对称性堆积。

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