Suppr超能文献

生化物质溶液的平衡组成和生化反应的热效应。

Equilibrium compositions of solutions of biochemical species and heats of biochemical reactions.

作者信息

Alberty R A

机构信息

Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

出版信息

Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3268-71. doi: 10.1073/pnas.88.8.3268.

Abstract

Equilibrium compositions of solutions of biochemical species can be calculated by use of general equilibrium computer programs that minimize the Gibbs energy. The standard Gibbs energies of formation and standard enthalpies of formation of the species in a biochemical system can be calculated by Gaussian reduction of the augmented transpose of the stoichiometric number matrix for the system. The conservation matrix, which is also needed for the calculation of the equilibrium composition, can be obtained in two ways. The hydrolysis of adenosine 5'-triphosphate in solutions containing magnesium ions can be treated by considering 17 species. The equilibrium composition and enthalpy are calculated before and after adding ATPase. This makes it possible to calculate DeltapH, DeltapMg, and the heat of reaction when ATPase is added.

摘要

生化物质溶液的平衡组成可通过使用使吉布斯自由能最小化的通用平衡计算机程序来计算。生化系统中各物质的标准生成吉布斯自由能和标准生成焓可通过对该系统化学计量数矩阵的增广转置进行高斯约化来计算。计算平衡组成所需的守恒矩阵可通过两种方式获得。含镁离子溶液中腺苷5'-三磷酸的水解可通过考虑17种物质来处理。在添加ATP酶之前和之后计算平衡组成和焓。这使得在添加ATP酶时能够计算ΔpH、ΔpMg和反应热。

相似文献

1
Equilibrium compositions of solutions of biochemical species and heats of biochemical reactions.
Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3268-71. doi: 10.1073/pnas.88.8.3268.
2
Calculation of standard transformed Gibbs energies and standard transformed enthalpies of biochemical reactants.
Arch Biochem Biophys. 1998 May 1;353(1):116-30. doi: 10.1006/abbi.1998.0638.
3
Standard thermodynamic formation properties for the adenosine 5'-triphosphate series.
Biochemistry. 1992 Nov 3;31(43):10610-5. doi: 10.1021/bi00158a025.
5
Calculation of equilibrium compositions of systems of enzyme-catalyzed reactions.
J Phys Chem B. 2006 Dec 7;110(48):24775-9. doi: 10.1021/jp065609m.
6
Biochemical thermodynamics and rapid-equilibrium enzyme kinetics.
J Phys Chem B. 2010 Dec 30;114(51):17003-12. doi: 10.1021/jp107337g. Epub 2010 Nov 19.
7
Levels of thermodynamic treatment of biochemical reaction systems.
Biophys J. 1993 Sep;65(3):1243-54. doi: 10.1016/S0006-3495(93)81146-9.
8
Equilibrium calculations on systems of biochemical reactions at specified pH and pMg.
Biophys Chem. 1992 Feb;42(2):117-31. doi: 10.1016/0301-4622(92)85002-l.
10
Thermodynamic properties of enzyme-catalyzed reactions involving guanine, xanthine, and their nucleosides and nucleotides.
Biophys Chem. 2006 Jun 1;121(3):157-62. doi: 10.1016/j.bpc.2006.01.004. Epub 2006 Feb 7.

引用本文的文献

2
An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.
Bioinformatics. 2012 Aug 1;28(15):2037-44. doi: 10.1093/bioinformatics/bts317. Epub 2012 May 29.
3
Simulation of cellular biochemical system kinetics.
Wiley Interdiscip Rev Syst Biol Med. 2011 Mar-Apr;3(2):136-46. doi: 10.1002/wsbm.116. Epub 2010 Dec 17.
4
A database of thermodynamic quantities for the reactions of glycolysis and the tricarboxylic acid cycle.
J Phys Chem B. 2010 Dec 16;114(49):16068-82. doi: 10.1021/jp911381p. Epub 2010 May 6.
7
Energy balance for analysis of complex metabolic networks.
Biophys J. 2002 Jul;83(1):79-86. doi: 10.1016/S0006-3495(02)75150-3.
8
Calculation of biochemical net reactions and pathways by using matrix operations.
Biophys J. 1996 Jul;71(1):507-15. doi: 10.1016/S0006-3495(96)79252-4.
9
Levels of thermodynamic treatment of biochemical reaction systems.
Biophys J. 1993 Sep;65(3):1243-54. doi: 10.1016/S0006-3495(93)81146-9.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验