人DNA聚合酶κ和大肠杆菌DNA聚合酶IV催化的跨越乙酰氨基芴衍生DNA加合物的合成。

Translesional synthesis past acetylaminofluorene-derived DNA adducts catalyzed by human DNA polymerase kappa and Escherichia coli DNA polymerase IV.

作者信息

Suzuki N, Ohashi E, Hayashi K, Ohmori H, Grollman A P, Shibutani S

机构信息

Laboratory of Chemical Biology, Department of Pharmacological Sciences, State University of New York at Stony Brook, Stony Brook, New York 11794-8651, USA.

出版信息

Biochemistry. 2001 Dec 18;40(50):15176-83. doi: 10.1021/bi010702g.

Abstract

Human DNA polymerase kappa (pol kappa) has a sequence significantly homologous with that of Escherichia coli DNA polymerase IV (pol IV). We used a truncated form of human pol kappa (pol kappaDeltaC) and full-length pol IV to explore the miscoding properties of these enzymes. Oligodeoxynucleotides, modified site-specifically with N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) and N-(deoxyguanosin-8-yl)-2-aminofluorene (dG-AF), were used as DNA templates in primer extension reactions that included all four dNTPs. Reactions catalyzed by pol kappaDeltaC were partially blocked one base prior to dG-AAF or dG-AF, and also opposite both lesions. At higher enzyme concentrations, a significant fraction of primer was extended. Analysis of the fully extended reaction product revealed incorporation of dTMP opposite dG-AAF, accompanied by much smaller amounts of dCMP, dAMP, and dGMP and some one- and two-base deletions. The product terminating 3' to the adduct site contained AMP misincorporated opposite dC. On templates containing dG-AF, dAMP, dTMP, and dCMP were incorporated opposite the lesion in approximately equal amounts, together with some one-base and two-base deletions. Steady-state kinetics analysis confirmed the results obtained from primer extension reactions catalyzed by pol kappa. In contract, primer extension reactions catalyzed by pol IV were blocked effectively by dG-AAF and dG-AF. At high concentrations of pol IV, full-length products were formed containing primarily one- or two-base deletions with dCMP, the correct base, incorporated opposite dG-AF. The miscoding properties of pol kappa observed in this study are consistent with mutational spectra observed when plasmid vectors containing dG-AAF or dG-AF are introduced into simian kidney cells [Shibutani, S., et al. (2001) Biochemistry 40, 3717-3722], supporting a model in which pol kappa plays a role in translesion synthesis past acetylaminofluorene-derived lesions in mammalian cells.

摘要

人类DNA聚合酶κ(pol κ)的序列与大肠杆菌DNA聚合酶IV(pol IV)的序列具有显著同源性。我们使用截短形式的人类pol κ(pol κDeltaC)和全长pol IV来探究这些酶的错配编码特性。用N-(脱氧鸟苷-8-基)-2-乙酰氨基芴(dG-AAF)和N-(脱氧鸟苷-8-基)-2-氨基芴(dG-AF)进行位点特异性修饰的寡脱氧核苷酸,在包含所有四种dNTP的引物延伸反应中用作DNA模板。由pol κDeltaC催化的反应在dG-AAF或dG-AF之前一个碱基处部分受阻,并且在两个损伤位点相对处也受阻。在较高的酶浓度下,相当一部分引物被延伸。对完全延伸的反应产物的分析显示,dTMP掺入到dG-AAF相对处,同时伴有少量的dCMP、dAMP和dGMP以及一些单碱基和双碱基缺失。在加合物位点3'端终止的产物含有与dC相对错掺入的AMP。在含有dG-AF的模板上,dAMP、dTMP和dCMP以大致相等的量掺入到损伤相对处,同时伴有一些单碱基和双碱基缺失。稳态动力学分析证实了由pol κ催化的引物延伸反应所获得的结果。相反,由pol IV催化的引物延伸反应被dG-AAF和dG-AF有效阻断。在高浓度的pol IV下,形成了主要含有单碱基或双碱基缺失且dCMP(正确碱基)掺入到dG-AF相对处的全长产物。在本研究中观察到的pol κ的错配编码特性与将含有dG-AAF或dG-AF的质粒载体引入猴肾细胞时观察到的突变谱一致[Shibutani, S.,等人(2001年)《生物化学》40, 3717 - 3722],支持了pol κ在哺乳动物细胞中通过乙酰氨基芴衍生的损伤进行跨损伤合成中起作用的模型。

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