Ben-Haïm E, Lesne A, Victor J M
Laboratoire de Physique Théorique des Liquides, Université Pierre et Marie Curie, Case Courrier 121, 4 Place Jussieu, 75252 Paris Cedex 05, France.
Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Nov;64(5 Pt 1):051921. doi: 10.1103/PhysRevE.64.051921. Epub 2001 Oct 30.
This paper focuses on mechanical aspects of chromatin biological functioning. Within a basic geometric modeling of the chromatin assembly, we give a complete set of elastic constants (twist and bend persistence lengths, stretch modulus and twist-stretch coupling constant) of the so-called 30-nm chromatin fiber, in terms of DNA elastic properties and geometric properties of the fiber assembly. The computation naturally embeds the fiber within a current analytical model known as the "extensible wormlike rope," allowing a straightforward prediction of the force-extension curves. We show that these elastic constants are strongly sensitive to the linker length, up to 1 bp, or equivalently to its twist, and might locally reach very low values, yielding a highly flexible and extensible domain in the fiber. In particular, the twist-stretch coupling constant, reflecting the chirality of the chromatin fiber, exhibits steep variations, and sign changes when the linker length is varied. We argue that this tunable elasticity might be a key feature for chromatin function, for instance, in the initiation and regulation of transcription.
本文聚焦于染色质生物学功能的力学方面。在染色质组装的基本几何模型中,根据DNA的弹性特性和纤维组装的几何特性,我们给出了所谓30纳米染色质纤维的一整套弹性常数(扭转和弯曲持续长度、拉伸模量以及扭转-拉伸耦合常数)。该计算自然地将纤维嵌入到一个当前被称为“可延伸蠕虫状绳索”的解析模型中,从而能够直接预测力-伸长曲线。我们表明,这些弹性常数对连接长度极为敏感,变化范围可达1个碱基对,或者等效地对其扭转敏感,并且在局部可能会达到非常低的值,从而在纤维中产生一个高度灵活且可延伸的区域。特别地,反映染色质纤维手性的扭转-拉伸耦合常数表现出急剧变化,并且当连接长度改变时会发生符号变化。我们认为这种可调节的弹性可能是染色质功能的一个关键特征,例如在转录的起始和调控过程中。