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MAGEST的更新:马博亚基因表达模式与序列标签

Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.

作者信息

Kawashima Takeshi, Kawashima Shuichi, Kohara Yuji, Kanehisa Minoru, Makabe Kazuhiro W

机构信息

Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

出版信息

Nucleic Acids Res. 2002 Jan 1;30(1):119-20. doi: 10.1093/nar/30.1.119.

Abstract

MAGEST is a database for maternal gene expression information for an ascidian, Halocynthia roretzi. The ascidian has become an animal model in developmental biological research because it shows a simple developmental process, and belongs to one of the chordate groups. Various data are deposited into the MAGEST database, e.g. the 3'- and 5'-tag sequences from the fertilized egg cDNA library, the results of similarity searches against GenBank and the expression data from whole mount in situ hybridization. Over the last 2 years, the data retrieval systems have been improved in several aspects, and the tag sequence entries have increased to over 20 000 clones. Additionally, we constructed a database, translated MAGEST, for the amino acid fragment sequences predicted from the EST data sets. Using this information comprehensively, we should obtain new information on gene functions. The MAGEST database is accessible via the Internet at http://www.genome.ad.jp/magest/.

摘要

MAGEST是一个关于海鞘(Halocynthia roretzi)母体基因表达信息的数据库。由于其发育过程简单,海鞘已成为发育生物学研究中的一种动物模型,并且属于脊索动物类群之一。各种数据被存入MAGEST数据库,例如来自受精卵cDNA文库的3'和5'标签序列、针对GenBank的相似性搜索结果以及全胚胎原位杂交的表达数据。在过去两年中,数据检索系统在多个方面得到了改进,标签序列条目已增加到20000多个克隆。此外,我们构建了一个数据库——翻译后的MAGEST,用于存储从EST数据集预测的氨基酸片段序列。综合利用这些信息,我们应该能够获得关于基因功能的新信息。可通过互联网在http://www.genome.ad.jp/magest/访问MAGEST数据库。

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