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8-溴鸟嘌呤的电子结构和光谱的从头算研究:与鸟嘌呤的对比研究

An ab initio study of electronic structure and spectra of 8-bromoguanine: a comparative study with guanine.

作者信息

Mishra S K, Mishra P C

机构信息

Department of Physics, Banaras Hindu University, Varanasi, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2001 Oct;57(12):2433-50. doi: 10.1016/s1386-1425(01)00447-4.

Abstract

Ground state geometries of the four tautomeric forms keto-N9H, keto-N7H, enol-N9H and enol-N7H of 8-bromoguanine (8BG) were optimized using the ab initio RHF procedure employing a mixed basis set consisting of the 6-311 + G* basis set for the nitrogen atom of the amino group and the bromine atom, and the 4-31G basis set for all other atoms. These calculations were followed by correlation correction of the total energy at the MP2 level using the same basis set. The different tautomeric forms of 8BG in the ground state were solvated using the isodensity surface polarized continuum model (IPCM) of the SCRF theory both at the RHF and MP2 levels. Excited states were generated employing configuration interaction among singly excited configurations (CIS) obtained using a limited window of filled and empty molecular orbitals. Formation of hydrogen-bonded complexes between 8BG and three water molecules in the ground and excited states was considered in order to account for solvent effects approximately. Excited state geometry was optimized in each case for the lowest singlet excited state which was found to be of pi-pi* type. Vibrational frequency analysis was performed in order to ensure that the stationary points located on the potential energy surfaces by geometry optimization were minima. It is found that 8BG would occur in the ground state dominantly in the keto-N7H form both at the aqueous solution-air interface and inside the bulk liquid. The observed absorption and fluorescence spectra of 8BG can be explained satisfactorily considering only the keto-N7H form of the molecule. The enol tautomers of 8BG do not appear to be important from the point of view of ground state properties or electronic spectra. The observed differences between the behaviors of guanine and 8BG can be easily explained on the basis of the results obtained.

摘要

使用从头算RHF程序对8-溴鸟嘌呤(8BG)的四种互变异构形式酮式-N9H、酮式-N7H、烯醇式-N9H和烯醇式-N7H的基态几何结构进行了优化,该程序采用了混合基组,其中氨基的氮原子和溴原子采用6-311 + G基组,所有其他原子采用4-31G基组。这些计算之后,使用相同的基组在MP2水平对总能量进行相关校正。8BG基态的不同互变异构形式在RHF和MP2水平均使用SCRF理论的等密度面极化连续介质模型(IPCM)进行溶剂化处理。利用填充和空分子轨道的有限窗口获得的单重激发组态之间的组态相互作用来产生激发态。考虑了8BG与三个水分子在基态和激发态下形成氢键复合物的情况,以便大致考虑溶剂效应。对每种情况下最低的单重激发态(发现为π-π型)的激发态几何结构进行了优化。进行了振动频率分析,以确保通过几何优化位于势能面上的驻点是极小值。研究发现,8BG在基态下主要以酮式-N7H形式存在于水溶液-空气界面和本体液体内部。仅考虑分子的酮式-N7H形式,就可以令人满意地解释8BG观察到的吸收光谱和荧光光谱。从基态性质或电子光谱的角度来看,8BG的烯醇互变异构体似乎并不重要。根据所得结果,可以很容易地解释鸟嘌呤和8BG行为之间观察到的差异。

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