Xie G, Bonner C A, Jensen R A
Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.
Comp Biochem Physiol C Toxicol Pharmacol. 2000 Jan;125(1):65-83. doi: 10.1016/s0742-8413(99)00090-0.
The uni-domain cyclohexadienyl dehydrogenases are able to use the alternative intermediates of tyrosine biosynthesis, prephenate or L-arogenate, as substrates. Members of this TyrA protein family have been generally considered to fall into two classes: sensitive or insensitive to feedback inhibition by L-tyrosine. A gene (tyrA(c)) encoding a cyclohexadienyl dehydrogenase from Pseudomonas stutzeri JM300 was cloned, sequenced, and expressed at a high level in Escherichia coli. This is the first molecular-genetic and biochemical characterization of a purified protein representing the feedback-sensitive type of cyclohexadienyl dehydrogenase. The catalytic-efficiency constant k(cat)/K(m) for prephenate (7.0x10(7) M/s) was much better than that of L-arogenate (5.7x10(6) M/s). TyrA(c) was sensitive to feedback inhibition by either L-tyrosine or 4-hydroxyphenylpyruvate, competitively with respect to either prephenate or L-arogenate and non-competitively with respect to NAD(+). A variety of related compounds were tested as inhibitors, and the minimal inhibitor structure was found to require only the aromatic ring and a hydroxyl substituent. Analysis by multiple alignment was used to compare 17 protein sequences representing TyrA family members having catalytic domains that are independent or fused to other catalytic domains, that exhibit broad substrate specificity or narrow substrate specificity, and that possess or lack sensitivity to endproduct inhibitors. We propose that the entire TyrA protein family lacks a discrete allosteric domain and that inhibitors act competitively at the catalytic site of different family members which exhibit individuality in the range and extent of molecules recognized as substrate or inhibitor.
单结构域环己二烯基脱氢酶能够利用酪氨酸生物合成的替代中间体——预苯酸或L-阿洛酸作为底物。这个TyrA蛋白家族的成员通常被认为分为两类:对L-酪氨酸的反馈抑制敏感或不敏感。克隆、测序了来自施氏假单胞菌JM300的编码环己二烯基脱氢酶的基因(tyrA(c)),并在大肠杆菌中高水平表达。这是对代表反馈敏感型环己二烯基脱氢酶的纯化蛋白的首次分子遗传学和生化特性分析。预苯酸的催化效率常数k(cat)/K(m)(7.0×10^7 M/s)远高于L-阿洛酸(5.7×10^6 M/s)。TyrA(c)对L-酪氨酸或4-羟基苯丙酮酸的反馈抑制敏感,对预苯酸或L-阿洛酸为竞争性抑制,对NAD(+)为非竞争性抑制。测试了多种相关化合物作为抑制剂,发现最小抑制剂结构仅需芳香环和一个羟基取代基。通过多序列比对分析比较了17个代表TyrA家族成员的蛋白质序列,这些成员具有独立或与其他催化结构域融合的催化结构域,表现出广泛或狭窄的底物特异性,对终产物抑制剂具有或不具有敏感性。我们提出,整个TyrA蛋白家族缺乏一个离散的变构结构域,抑制剂在不同家族成员的催化位点竞争性起作用,这些成员在被识别为底物或抑制剂的分子范围和程度上表现出个体差异。