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水合壳层的X射线和中子散射分析:基于序列预测和模型拟合的分子解释。

X-ray and neutron scattering analyses of hydration shells: a molecular interpretation based on sequence predictions and modelling fits.

作者信息

Perkins S J

机构信息

Department of Biochemistry and Molecular Biology, Royal Free and University College Medical School, Rowland Hill Street, London NW3 2PF, UK.

出版信息

Biophys Chem. 2001 Nov 28;93(2-3):129-39. doi: 10.1016/s0301-4622(01)00216-2.

Abstract

Solution scattering is a low resolution diffraction method that provides important structural data on proteins. The ability to model scattering curves by recourse to known crystal structures for proteins under study significantly improves the resolution (and the utility) of the method because of the strict constraints that the crystal structures impose. For these structure determinations, a molecular description of the effect of hydration shells is needed. In calibration studies used for X-ray scattering curve modelling, it has been reproducibly found that a hydration shell is required. In molecular terms, this results from the higher electron density of the hydration shell compared to that of bulk water, which then becomes similar to that of the protein. This is well represented by a level of 0.3 g H(2)O/g glycoprotein and a water molecule volume of 0.0245 nm(3). Procedures for the addition of a hydration shell to a sphere model of a protein are described. For neutron scattering fits, it is not necessary to incorporate a hydration shell, as to a good approximation this is not detectable. In molecular terms, this apparent absence of the neutron hydration shell results from the effect of proton exchange on the scattering densities of bulk water and bound water which causes these to be similar but different from that of the protein.

摘要

溶液散射是一种低分辨率衍射方法,可提供有关蛋白质的重要结构数据。借助所研究蛋白质的已知晶体结构对散射曲线进行建模的能力,由于晶体结构所施加的严格限制,显著提高了该方法的分辨率(和实用性)。对于这些结构测定,需要对水化层的影响进行分子描述。在用于X射线散射曲线建模的校准研究中,反复发现需要一个水化层。从分子角度来看,这是由于水化层的电子密度高于本体水,进而变得与蛋白质的电子密度相似。这可以用0.3 g H₂O/g糖蛋白的水平和0.0245 nm³的水分子体积很好地表示。本文描述了在蛋白质球体模型中添加水化层的步骤。对于中子散射拟合,无需纳入水化层,因为在良好近似下这是不可检测的。从分子角度来看,中子水化层明显不存在是由于质子交换对本体水和结合水散射密度的影响,这使得它们相似但与蛋白质的不同。

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