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铜绿微囊藻UV025的质粒pMa025的特性分析

Characterization of pMa025, a plasmid from the cyanobacterium Microcystis aeruginosa UV025.

作者信息

Wallace Margaret M, Miller David W, Raps Shirley

机构信息

Department of Biological Sciences, Hunter College, CUNY, New York, NY 10021, USA.

出版信息

Arch Microbiol. 2002 Apr;177(4):332-8. doi: 10.1007/s00203-002-0397-3. Epub 2002 Feb 16.

Abstract

The characterization of pMa025, a plasmid isolated from the unicellular, toxin-producing cyanobacterium Microcystis aeruginosa UV025, is described. A recombinant plasmid, pMaL [pMa025-pBluescript II SK(-)] was constructed for mapping, sequencing, and development of shuttle vectors capable of transforming both Escherichia coli and M. aeruginosa. pMa025 is 8,018 bp in length and has a G+C content of 62.3 mol%. Nineteen presumptive ORFs, ORF A - ORF S were identified using ATG or GTG as initiation codons. Fifteen different ORFs, ORF a - ORF o were identified using TGA as a degenerate codon for tryptophan. GTG was the start codon in two-thirds of the putative ORFs when TGA was the termination codon. GTG was the start codon in one-third of the putative ORFs when TGA was used as a codon for tryptophan. The deduced amino acid sequence from ORF j (3,114 bp) was significantly similar to that of a putative plasmid replication protein, RepA, from plasmid pUH24 of Synecho coccus sp. strain PCC7942. M. aeruginosa UV027 and E. coli were transformed to carbenicillin resistance with pMaL-D7, a 6.4-kb hybrid plasmid (3.46 kb pMa025, 2.95 kb pBluescript II) generated from the nested deletion strategy. pMaL-D7 will be used as a shuttle vector.

摘要

本文描述了从单细胞产毒素蓝藻铜绿微囊藻UV025中分离得到的质粒pMa025的特征。构建了重组质粒pMaL [pMa025-pBluescript II SK(-)],用于绘制图谱、测序以及开发能够转化大肠杆菌和铜绿微囊藻的穿梭载体。pMa025长度为8018 bp,G+C含量为62.3 mol%。使用ATG或GTG作为起始密码子,鉴定出19个推定的开放阅读框,即ORF A - ORF S。使用TGA作为色氨酸的简并密码子,鉴定出15个不同的开放阅读框,即ORF a - ORF o。当TGA为终止密码子时,三分之二的推定开放阅读框以GTG作为起始密码子。当TGA用作色氨酸密码子时,三分之一的推定开放阅读框以GTG作为起始密码子。从ORF j(3114 bp)推导的氨基酸序列与来自集胞藻属菌株PCC7942的质粒pUH24的推定质粒复制蛋白RepA的序列显著相似。用通过嵌套缺失策略产生的6.4 kb杂交质粒pMaL-D7(3.46 kb pMa025,2.95 kb pBluescript II)将铜绿微囊藻UV027和大肠杆菌转化为对羧苄青霉素具有抗性。pMaL-D7将用作穿梭载体。

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