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通过直接观察超氧化物研究锰超氧化物歧化酶的催化途径

Catalytic pathway of manganese superoxide dismutase by direct observation of superoxide.

作者信息

Silverman David N, Nick Harry S

机构信息

Department of Pharmacology, University of Florida College of Medicine, Gainesville, Florida 32610, USA.

出版信息

Methods Enzymol. 2002;349:61-74. doi: 10.1016/s0076-6879(02)49321-4.

Abstract

Measurement of catalysis by MnSOD using direct observation of the UV absorbance of superoxide allows determination of steady-state catalytic constants. Stabilizing superoxide in aprotic solvents such as dimethyl sulfoxide permits the use of stopped-flow spectrophotometry, although significant information is lost in the 2- to 4-msec mixing time; generating superoxide by pulse radiolysis requires no mixing time. Studies show that kcat/Km for the decay of superoxide catalyzed by MnSOD proceeds at diffusion control. Investigations using solvent hydrogen isotope effects and enhancement of catalysis by exogenous proton donors show that kcat near 10(4) sec-1 contains a significant contribution from proton transfer steps. The active site of MnSOD is dominated by a hydrogen bond network comprising the manganese-bound aqueous ligand, the side chains of four residues (Gln-143, Tyr-34, His-30, and Tyr-166 from an adjacent subunit), as well as other water molecules. Interrupting this hydrogen bond network by conservative replacement of residues 30, 34, and 166 causes a 10- to 40-fold decrease in maximal velocity, interpreted as an effect on proton transport to the active site, with smaller effects on kcat/Km. Replacement of Gln-143 causes a much greater decrease in catalytic activity, by two to three orders of magnitude, and causes significant changes to the redox potential as well. During catalysis, MnSOD is inhibited by a peroxide complex of the metal in the active site, different from the inhibition of FeSOD and Cu,ZnSOD by Fenton chemistry. Site-specific mutagenesis of active-site residues alters the extent of product inhibition of MnSOD as well, indicating that this is not only a property of the metal. The replacement of Trp-161 with phenylalanine results in a variant that is completely blocked in catalysis by product inhibition.

摘要

通过直接观察超氧化物的紫外吸光度来测量锰超氧化物歧化酶(MnSOD)的催化作用,可以确定稳态催化常数。在非质子溶剂(如二甲基亚砜)中稳定超氧化物,允许使用停流分光光度法,尽管在2至4毫秒的混合时间内会丢失大量信息;通过脉冲辐解产生超氧化物则不需要混合时间。研究表明,MnSOD催化超氧化物衰变的催化常数与底物亲和力之比(kcat/Km)处于扩散控制。利用溶剂氢同位素效应和外源质子供体对催化作用的增强进行的研究表明,接近10⁴秒⁻¹的催化常数(kcat)中质子转移步骤有显著贡献。MnSOD的活性位点由一个氢键网络主导,该网络包括与锰结合的水配体、四个残基(来自相邻亚基的Gln-143、Tyr-34、His-30和Tyr-166)的侧链以及其他水分子。通过保守替换残基30、34和166来中断这个氢键网络,会导致最大反应速度下降10至40倍,可以解释为对质子向活性位点传输的影响,对催化常数与底物亲和力之比(kcat/Km)的影响较小。替换Gln-143会使催化活性下降两到三个数量级,并且也会导致氧化还原电位发生显著变化。在催化过程中,MnSOD被活性位点中金属的过氧化物复合物抑制,这与铁超氧化物歧化酶(FeSOD)和铜锌超氧化物歧化酶(Cu,ZnSOD)被芬顿化学抑制不同。活性位点残基的定点诱变也会改变MnSOD产物抑制的程度,这表明这不仅仅是金属的特性。用苯丙氨酸替换Trp-161会产生一个变体,该变体在催化过程中完全被产物抑制所阻断。

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