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系统发育:细菌的一个非嗜热祖先。

Phylogeny: a non-hyperthermophilic ancestor for bacteria.

作者信息

Brochier Céline, Philippe Hervé

机构信息

Phylogénie, Bioinformatique et Génome, UMR 7622 CNRS, Université Pierre et Marie Curie, 9 quai St Bernard, 75005 Paris, France.

出版信息

Nature. 2002 May 16;417(6886):244. doi: 10.1038/417244a.


DOI:10.1038/417244a
PMID:12015592
Abstract

The first phyla that emerge in the tree of life based on ribosomal RNA (rRNA) sequences are hyperthermophilic, which led to the hypothesis that the universal ancestor, and possibly the original living organism, was hyperthermophilic. Here we reanalyse the bacterial phylogeny based on rRNA using a more reliable approach, and find that hyperthermophilic bacteria (such as Aquificales and Thermotogales) do not emerge first, suggesting that the Bacteria had a non-hyperthermophilic ancestor. It seems that Planctomycetales, a phylum with numerous peculiarities, could be the first emerging bacterial group.

摘要

基于核糖体RNA(rRNA)序列构建的生命之树上最早出现的门类是嗜热菌,这引发了一种假说,即共同祖先乃至最初的生物体可能都是嗜热菌。在此,我们使用更可靠的方法重新分析基于rRNA的细菌系统发育,发现嗜热菌(如产水菌目和栖热袍菌目)并非最先出现,这表明细菌有一个非嗜热的祖先。似乎具有众多独特之处的浮霉菌门可能是最早出现的细菌类群。

相似文献

[1]
Phylogeny: a non-hyperthermophilic ancestor for bacteria.

Nature. 2002-5-16

[2]
The first lines of divergence in the Bacteria domain were the hyperthermophilic organisms, the Thermotogales and the Aquificales, and not the mesophilic Planctomycetales.

Biosystems. 2007-1

[3]
The universal ancestor and the ancestors of Archaea and Bacteria were anaerobes whereas the ancestor of the Eukarya domain was an aerobe.

J Evol Biol. 2007-3

[4]
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

Nat Rev Microbiol. 2008-5

[5]
Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA.

Environ Microbiol. 2007-1

[6]
The ancestor of the Bacteria domain was a hyperthermophile.

J Theor Biol. 2003-10-7

[7]
Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes.

Mol Phylogenet Evol. 1999-10

[8]
Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester.

Environ Microbiol. 2005-8

[9]
Parallel adaptations to high temperatures in the Archaean eon.

Nature. 2008-12-18

[10]
Rates of ribosomal RNA evolution are uniquely accelerated in eukaryotes.

J Mol Evol. 2002-7

引用本文的文献

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Genome Biol Evol. 2023-9-4

[2]
Conflicts in Mitochondrial Phylogenomics of Branchiopoda, with the First Complete Mitogenome of Laevicaudata (Crustacea: Branchiopoda).

Curr Issues Mol Biol. 2023-1-18

[3]
The methanogen core and pangenome: conservation and variability across biology's growth temperature extremes.

DNA Res. 2023-2-1

[4]
The Mutational Robustness of the Genetic Code and Codon Usage in Environmental Context: A Non-Extremophilic Preference?

Life (Basel). 2021-7-30

[5]
Plausibility of Early Life in a Relatively Wide Temperature Range: Clues from Simulated Metabolic Network Expansion.

Life (Basel). 2021-7-24

[6]
Phylogenetic analysis of mutational robustness based on codon usage supports that the standard genetic code does not prefer extreme environments.

Sci Rep. 2021-5-26

[7]
The metabolic network of the last bacterial common ancestor.

Commun Biol. 2021-3-26

[8]
Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution.

Nat Commun. 2020-8-7

[9]
Plasmids Related to the Symbiotic Nitrogen Fixation Are Not Only Cooperated Functionally but Also May Have Evolved over a Time Span in Family Rhizobiaceae.

Genome Biol Evol. 2020-11-3

[10]
Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Protoplasma. 2020-5

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