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在0.1至200兆帕压力下,在线性四肽Gly-Gly-X-Ala的水溶液中测得的常见氨基酸残基的1H-NMR参数。

1H-NMR parameters of common amino acid residues measured in aqueous solutions of the linear tetrapeptides Gly-Gly-X-Ala at pressures between 0.1 and 200 MPa.

作者信息

Arnold Martin Reinhard, Kremer Werner, Lüdemann Hans Dietrich, Kalbitzer Hans Robert

机构信息

Institut für Biophysik und physikalische Biochemie, Universität Regensburg, Regensburg, Germany.

出版信息

Biophys Chem. 2002 May 2;96(2-3):129-40. doi: 10.1016/s0301-4622(02)00018-2.

Abstract

For the interpretation of chemical shift changes induced by pressure in proteins, a comparison with random-coil data is important. For providing such a data basis, the pressure dependence of the 1H-NMR chemical shifts of the amino acids X in the random-coil model peptides Gly-Gly-X-Ala were studied for the 20 common amino acids at two pH values (pH 5.0 and 5.4) at 305 K, in the pressure range from 0.1 to 200 MPa. The largest shift changes deltadelta with pressure p can be observed for the backbone amide protons. The average linear pressure coefficient delta(deltap) is 0.38 ppm GPa(-1), with a root mean square deviation of 0.2 ppm GPa(-1). In contrast to the downfield shift typical for amide protons, the H(alpha)-resonances typically shift upfield, with a pressure coefficient of -0.025 ppm GPa(-1) and a root mean square deviation of 0.05 ppm GPa(-1). The side chain resonances are only weakly influenced by pressure, on average they are shifted by 0.014 ppm GPa(-1)) with a root mean square deviation of 0.14 ppm GPa(-1). The exceptions are the side chain amide protons of asparagine and glutamine. Here, values of 0.214 (Asn H(delta21)), 0.417 (Asn H(delta22)), 0.260 (Gln H(varepsilon21)) and 0.395 (Gln H(varepsilon22)) ppm GPa(-1) can be observed. In both cases, the pressure dependent shift is larger for the pro-E proton than for the pro-Z proton. Within the limits of error the equilibrium constant for the trans- and cis-conformers at the proline peptide bond is independent of pressure in the pressure range studied.

摘要

对于解释蛋白质中压力诱导的化学位移变化,与无规卷曲数据进行比较很重要。为了提供这样一个数据基础,研究了无规卷曲模型肽Gly-Gly-X-Ala中20种常见氨基酸的1H-NMR化学位移在305K、两个pH值(pH 5.0和5.4)下,压力范围从0.1到200MPa时对压力的依赖性。主链酰胺质子随压力p的最大位移变化Δδ可以观察到。平均线性压力系数δ(Δp)为0.38 ppm GPa-1,均方根偏差为0.2 ppm GPa-1。与酰胺质子典型的向低场位移相反,Hα共振通常向高场位移,压力系数为-0.025 ppm GPa-1,均方根偏差为0.05 ppm GPa-1。侧链共振受压力的影响较弱,平均位移为0.014 ppm GPa-1,均方根偏差为0.14 ppm GPa-1。例外情况是天冬酰胺和谷氨酰胺的侧链酰胺质子。这里,可以观察到0.214(Asn Hδ21)、0.417(Asn Hδ22)、0.260(Gln Hε21)和0.395(Gln Hε22)ppm GPa-1的值。在这两种情况下,脯氨酸肽键处反式和顺式构象体的平衡常数在所研究的压力范围内与压力无关。

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