• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在0.1至200兆帕压力下,在线性四肽Gly-Gly-X-Ala的水溶液中测得的常见氨基酸残基的1H-NMR参数。

1H-NMR parameters of common amino acid residues measured in aqueous solutions of the linear tetrapeptides Gly-Gly-X-Ala at pressures between 0.1 and 200 MPa.

作者信息

Arnold Martin Reinhard, Kremer Werner, Lüdemann Hans Dietrich, Kalbitzer Hans Robert

机构信息

Institut für Biophysik und physikalische Biochemie, Universität Regensburg, Regensburg, Germany.

出版信息

Biophys Chem. 2002 May 2;96(2-3):129-40. doi: 10.1016/s0301-4622(02)00018-2.

DOI:10.1016/s0301-4622(02)00018-2
PMID:12034435
Abstract

For the interpretation of chemical shift changes induced by pressure in proteins, a comparison with random-coil data is important. For providing such a data basis, the pressure dependence of the 1H-NMR chemical shifts of the amino acids X in the random-coil model peptides Gly-Gly-X-Ala were studied for the 20 common amino acids at two pH values (pH 5.0 and 5.4) at 305 K, in the pressure range from 0.1 to 200 MPa. The largest shift changes deltadelta with pressure p can be observed for the backbone amide protons. The average linear pressure coefficient delta(deltap) is 0.38 ppm GPa(-1), with a root mean square deviation of 0.2 ppm GPa(-1). In contrast to the downfield shift typical for amide protons, the H(alpha)-resonances typically shift upfield, with a pressure coefficient of -0.025 ppm GPa(-1) and a root mean square deviation of 0.05 ppm GPa(-1). The side chain resonances are only weakly influenced by pressure, on average they are shifted by 0.014 ppm GPa(-1)) with a root mean square deviation of 0.14 ppm GPa(-1). The exceptions are the side chain amide protons of asparagine and glutamine. Here, values of 0.214 (Asn H(delta21)), 0.417 (Asn H(delta22)), 0.260 (Gln H(varepsilon21)) and 0.395 (Gln H(varepsilon22)) ppm GPa(-1) can be observed. In both cases, the pressure dependent shift is larger for the pro-E proton than for the pro-Z proton. Within the limits of error the equilibrium constant for the trans- and cis-conformers at the proline peptide bond is independent of pressure in the pressure range studied.

摘要

对于解释蛋白质中压力诱导的化学位移变化,与无规卷曲数据进行比较很重要。为了提供这样一个数据基础,研究了无规卷曲模型肽Gly-Gly-X-Ala中20种常见氨基酸的1H-NMR化学位移在305K、两个pH值(pH 5.0和5.4)下,压力范围从0.1到200MPa时对压力的依赖性。主链酰胺质子随压力p的最大位移变化Δδ可以观察到。平均线性压力系数δ(Δp)为0.38 ppm GPa-1,均方根偏差为0.2 ppm GPa-1。与酰胺质子典型的向低场位移相反,Hα共振通常向高场位移,压力系数为-0.025 ppm GPa-1,均方根偏差为0.05 ppm GPa-1。侧链共振受压力的影响较弱,平均位移为0.014 ppm GPa-1,均方根偏差为0.14 ppm GPa-1。例外情况是天冬酰胺和谷氨酰胺的侧链酰胺质子。这里,可以观察到0.214(Asn Hδ21)、0.417(Asn Hδ22)、0.260(Gln Hε21)和0.395(Gln Hε22)ppm GPa-1的值。在这两种情况下,脯氨酸肽键处反式和顺式构象体的平衡常数在所研究的压力范围内与压力无关。

相似文献

1
1H-NMR parameters of common amino acid residues measured in aqueous solutions of the linear tetrapeptides Gly-Gly-X-Ala at pressures between 0.1 and 200 MPa.在0.1至200兆帕压力下,在线性四肽Gly-Gly-X-Ala的水溶液中测得的常见氨基酸残基的1H-NMR参数。
Biophys Chem. 2002 May 2;96(2-3):129-40. doi: 10.1016/s0301-4622(02)00018-2.
2
'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.肽系列GGXGG的“无规卷曲”¹H化学位移随温度和三氟乙醇浓度的变化而获得。
J Biomol NMR. 1995 Jan;5(1):14-24. doi: 10.1007/BF00227466.
3
Pressure dependence of side chain H and N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH.在模型肽 Ac-Gly-Gly-Xxx-Ala-NH 中侧链 H 和 N-化学位移的压力依赖性。
J Biomol NMR. 2020 Sep;74(8-9):381-399. doi: 10.1007/s10858-020-00326-w. Epub 2020 Jun 22.
4
1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects.常见氨基酸的1H、13C和15N随机卷曲核磁共振化学位移。I. 近邻效应的研究。
J Biomol NMR. 1995 Jan;5(1):67-81. doi: 10.1007/BF00227471.
5
1H and 31P NMR spectroscopy of phosphorylated model peptides.磷酸化模型肽的1H和31P核磁共振光谱学
Int J Pept Protein Res. 1994 Sep;44(3):193-8. doi: 10.1111/j.1399-3011.1994.tb00160.x.
6
1H- and 13C-NMR investigations on cis-trans isomerization of proline peptide bonds and conformation of aromatic side chains in H-Trp-(Pro)n-Tyr-OH peptides.对H-Trp-(Pro)n-Tyr-OH肽中脯氨酸肽键的顺反异构化和芳香族侧链构象的1H-和13C-核磁共振研究。
Biopolymers. 1993 May;33(5):781-95. doi: 10.1002/bip.360330507.
7
15N and 1H NMR study of histidine containing protein (HPr) from Staphylococcus carnosus at high pressure.对来自肉葡萄球菌的含组氨酸蛋白(HPr)在高压下的15N和1H核磁共振研究。
Protein Sci. 2000 Apr;9(4):693-703. doi: 10.1110/ps.9.4.693.
8
Effect of pH, urea, peptide length, and neighboring amino acids on alanine alpha-proton random coil chemical shifts.pH值、尿素、肽链长度及相邻氨基酸对丙氨酸α-质子随机卷曲化学位移的影响
Biopolymers. 2007 Jan;85(1):72-80. doi: 10.1002/bip.20614.
9
Pressure dependence of side chain C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH.模型肽Ac-Gly-Gly-Xxx-Ala-NH中侧链C化学位移的压力依赖性
J Biomol NMR. 2017 Oct;69(2):53-67. doi: 10.1007/s10858-017-0134-5. Epub 2017 Sep 14.
10
Thermodynamic origin of cis/trans isomers of a proline-containing beta-turn model dipeptide in aqueous solution: a combined variable temperature 1H-NMR, two-dimensional 1H,1H gradient enhanced nuclear Overhauser effect spectroscopy (NOESY), one-dimensional steady-state intermolecular 13C,1H NOE, and molecular dynamics study.含脯氨酸的β-转角模型二肽在水溶液中顺式/反式异构体的热力学起源:变温1H-NMR、二维1H,1H梯度增强核Overhauser效应光谱(NOESY)、一维稳态分子间13C,1H NOE及分子动力学联合研究
Biopolymers. 2000 Jan;53(1):72-83. doi: 10.1002/(SICI)1097-0282(200001)53:1<72::AID-BIP7>3.0.CO;2-5.

引用本文的文献

1
Solution structure and pressure response of thioredoxin-1 of Plasmodium falciparum.恶性疟原虫硫氧还蛋白-1 的结构与压力响应。
PLoS One. 2024 Apr 18;19(4):e0301579. doi: 10.1371/journal.pone.0301579. eCollection 2024.
2
C-H Groups as Donors in Hydrogen Bonds: A Historical Overview and Occurrence in Proteins and Nucleic Acids.C-H 基团作为氢键供体:历史概述及在蛋白质和核酸中的存在。
Int J Mol Sci. 2023 Aug 24;24(17):13165. doi: 10.3390/ijms241713165.
3
Experimental NOE, Chemical Shift, and Proline Isomerization Data Provide Detailed Insights into Amelotin Oligomerization.
实验性 NOE、化学位移和脯氨酸异构化数据为 amelotin 寡聚化提供了详细的见解。
J Am Chem Soc. 2023 Aug 16;145(32):18063-18074. doi: 10.1021/jacs.3c05710. Epub 2023 Aug 7.
4
The influence of random-coil chemical shifts on the assessment of structural propensities in folded proteins and IDPs.无规卷曲化学位移对折叠蛋白和内在无序蛋白结构倾向评估的影响。
RSC Adv. 2023 Mar 31;13(15):10182-10203. doi: 10.1039/d3ra00977g. eCollection 2023 Mar 27.
5
Nanotheranostics through Mitochondria-targeted Delivery with Fluorescent Peptidomimetic Nanohybrids for Apoptosis Induction of Brain Cancer Cells.通过荧光肽模拟纳米杂合体靶向线粒体递送来进行脑癌细胞的凋亡诱导的纳米诊疗剂。
Nanotheranostics. 2021 Feb 8;5(2):213-239. doi: 10.7150/ntno.54491. eCollection 2021.
6
DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl H-NMR probe.通过遗传编码三甲基硅基 H-NMR 探针解析 arrestin 中受体核心诱导和配体依赖性构象变化。
Nat Commun. 2020 Sep 25;11(1):4857. doi: 10.1038/s41467-020-18433-5.
7
Pressure dependence of side chain H and N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH.在模型肽 Ac-Gly-Gly-Xxx-Ala-NH 中侧链 H 和 N-化学位移的压力依赖性。
J Biomol NMR. 2020 Sep;74(8-9):381-399. doi: 10.1007/s10858-020-00326-w. Epub 2020 Jun 22.
8
Using NMR Chemical Shifts to Determine Residue-Specific Secondary Structure Populations for Intrinsically Disordered Proteins.利用核磁共振化学位移确定内在无序蛋白质中特定残基的二级结构群体
Methods Enzymol. 2018;611:101-136. doi: 10.1016/bs.mie.2018.09.011. Epub 2018 Oct 22.
9
Pressure dependence of side chain C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH.模型肽Ac-Gly-Gly-Xxx-Ala-NH中侧链C化学位移的压力依赖性
J Biomol NMR. 2017 Oct;69(2):53-67. doi: 10.1007/s10858-017-0134-5. Epub 2017 Sep 14.
10
Pressure dependence of backbone chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2.模型肽Ac-Gly-Gly-Xxx-Ala-NH2中主链化学位移的压力依赖性
J Biomol NMR. 2016 Jun;65(2):65-77. doi: 10.1007/s10858-016-0030-4. Epub 2016 Jun 22.