Huang Ying, Wang Liming, Lu Zhitang, Hong Long, Liu Zhiheng, Tan Geok Yuan Annie, Goodfellow Michael
Int J Syst Evol Microbiol. 2002 May;52(Pt 3):977-982. doi: 10.1099/00207713-52-3-977.
The 16S rDNA sequences of four strains, i.e. three type strains of Actinobispora and strain 6330T, were determined and compared with those of representatives of the family Pseudonocardiaceae by using two tree-making algorithms. All the validly described species of the genera Actinobispora and Pseudonocardia were consistently recovered as a mixed group in phylogenetic trees, and were distinct from the other genera of the family Pseudonocardiaceae. Strain 6330T formed a distinct phyletic line in the 16S rDNA tree and was most closely associated with the type strain of Actinobispora aurantiaca. The use of specific PCR primers designed for differentiating the genus Pseudonocardia from other genera of the family Pseudonocardiaceae showed that all the Actinobispora species and strain 6330T have the same amplified 640 bp 16S rDNA fragment as members of the genus Pseudonocardia. The DNA-DNA relatedness, chemotaxonomic and phenotypic data also supported classification of these taxa in the genus Pseudonocardia, and distinguished each from the others. On the basis of these observations, it is proposed that the genera Actinobispora and Pseudonocardia be combined in an emended genus Pseudonocardia, and that strain 6330T be classified in the same genus as Pseudonocardia zijingensis sp. nov. The type strain is 6330T (= AS 4.1545T = JCM 11117T).
测定了4株菌株(即3株放线双孢菌模式菌株和6330T菌株)的16S rDNA序列,并使用两种建树算法与假诺卡氏菌科的代表菌株进行了比较。在系统发育树中,放线双孢菌属和假诺卡氏菌属所有有效描述的物种始终被归为一个混合类群,且与假诺卡氏菌科的其他属不同。6330T菌株在16S rDNA树中形成了一个独特的进化分支,与橙黄放线双孢菌模式菌株关系最为密切。使用为区分假诺卡氏菌属与假诺卡氏菌科其他属而设计的特异性PCR引物表明,所有放线双孢菌物种和6330T菌株与假诺卡氏菌属成员具有相同的640 bp 16S rDNA扩增片段。DNA-DNA相关性、化学分类学和表型数据也支持将这些分类单元归为假诺卡氏菌属,并将它们彼此区分开来。基于这些观察结果,建议将放线双孢菌属和假诺卡氏菌属合并为一个修订后的假诺卡氏菌属,并将6330T菌株与紫金牛假诺卡氏菌新种归为同一属。模式菌株为6330T(= AS 4.1545T = JCM 11117T)。