Ghosh S, Reich T
Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110-1093, USA.
Ann Hum Genet. 2002 Mar;66(Pt 2):169-82. doi: 10.1017/S0003480002001070.
Sibship methods have been shown to be more powerful than traditional sib-pair methods in mapping quantative trait loci. We propose a statistical procedure which integrates data on sibships into a so-called 'contrast function', a natural extension of the classical squared sib-pair trait difference proposed by Haseman & Elston (1972). We also develop a combined mean and contrast function which provides more information on linkage compared to the contrast function. Our method is extended to multiple, epistatically interacting trait loci. Monte-Carlo simulations are included to compare the efficiencies of the proposed procedures with some currently used methods. An application of our proposed method is presented using data on alcohol dependence.