TFBS：转录因子结合位点分析的计算框架。
TFBS: Computational framework for transcription factor binding site analysis.
作者信息
Lenhard Boris, Wasserman Wyeth W
机构信息
Bioinformatics Unit, Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden.
出版信息
Bioinformatics. 2002 Aug;18(8):1135-6. doi: 10.1093/bioinformatics/18.8.1135.
MOTIVATION
TFBS is a set of integrated, object-oriented Perl modules for transcription factor binding site detection and analysis. It implements objects representing specificity profile matrices, binding sites and sets thereof, pattern generators, and pattern database interfaces. The modules are interoperable with the BioPerl open source system.
AVAILABILITY AND SUPPLEMENTARY INFORMATION
The module package with documentation and example scripts are available at http://forkhead.cgb.ki.se/TFBS/
动机
TFBS是一组用于转录因子结合位点检测和分析的集成式、面向对象的Perl模块。它实现了代表特异性谱矩阵、结合位点及其集合、模式生成器和模式数据库接口的对象。这些模块可与BioPerl开源系统互操作。
可用性和补充信息
包含文档和示例脚本的模块包可在http://forkhead.cgb.ki.se/TFBS/获取。
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