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小鼠μ阿片受体基因(Oprm)一个新型启动子的鉴定与表征,该启动子产生八种剪接变体。

Identification and characterization of a novel promoter of the mouse mu opioid receptor gene (Oprm) that generates eight splice variants.

作者信息

Pan Ying-Xian

机构信息

Laboratory of Molecular Neuro-Pharmacology, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA.

出版信息

Gene. 2002 Jul 24;295(1):97-108. doi: 10.1016/s0378-1119(02)00825-9.

Abstract

Our previous studies isolated and characterized eight splicing variants containing exon 11 as the first coding exon. The location of exon 11 about 10 kb upstream from exon 1 dual promoters implied another promoter to drive expression of the exon 11 variants. I now identify the second promoter in the 5'-flanking region of exon 11. One major transcriptional start point was determined. Sequence analysis indicated that the 5'-flanking region of the exon 11 contained a putative TATA box, several CAAT boxes and a number of cis-acting elements. Functional analysis suggested that exon 11 promoter activity was most evident in neuronal-like cells. A basal core region containing the TATA box, a negative region and a positive region were identified. Electrophoretic mobility shift assays with the nuclear extracts from NIE-115 cells revealed several protein complexes that likely contained TATA box-associated factors, NF-1-like and cMyc-Max-like proteins, respectively. It also showed that a TATA-binding protein specifically bound to the TATA box fragment. Mutation analysis suggested that the TATA box in the basal core region played a fundamental role in the exon 11 promoter, whereas the NF-1 site acted as a positive element.

摘要

我们之前的研究分离并鉴定了八个剪接变体,这些变体包含外显子11作为首个编码外显子。外显子11位于外显子1双启动子上游约10 kb处,这意味着存在另一个启动子来驱动外显子11变体的表达。我现在确定了外显子11 5'侧翼区域中的第二个启动子。确定了一个主要转录起始点。序列分析表明,外显子11的5'侧翼区域包含一个假定的TATA框、几个CAAT框和许多顺式作用元件。功能分析表明,外显子11启动子活性在神经元样细胞中最为明显。鉴定出一个包含TATA框的基础核心区域、一个负性区域和一个正性区域。用NIE-115细胞的核提取物进行的电泳迁移率变动分析揭示了几种蛋白复合物,它们可能分别包含与TATA框相关的因子、NF-1样蛋白和cMyc-Max样蛋白。还表明,一种TATA结合蛋白特异性结合TATA框片段。突变分析表明,基础核心区域中的TATA框在外显子11启动子中起基本作用,而NF-1位点作为一个正性元件。

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