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半胱氨酸连接的非血红素铁酶超氧化物还原酶的合成模型:通过X射线吸收光谱法对Fe(III)-OOH中间体的观察和结构表征

Synthetic models for the cysteinate-ligated non-heme iron enzyme superoxide reductase: observation and structural characterization by XAS of an Fe(III)-OOH intermediate.

作者信息

Shearer Jason, Scarrow Robert C, Kovacs Julie A

机构信息

Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA.

出版信息

J Am Chem Soc. 2002 Oct 2;124(39):11709-17. doi: 10.1021/ja012722b.

Abstract

Superoxide reductases (SORs) belong to a new class of metalloenzymes that degrade superoxide by reducing it to hydrogen peroxide. These enzymes contain a catalytic iron site that cycles between the Fe(II) and Fe(III) states during catalysis. A key step in the reduction of superoxide has been suggested to involve HO(2) binding to Fe(II), followed by innersphere electron transfer to afford an Fe(III)-OO(H) intermediate. In this paper, the mechanism of the superoxide-induced oxidation of a synthetic ferrous SOR model (Fe(II)(S(Me2)N(4)(tren)) (1)) to afford Fe(III)(S(Me2)N(4)(tren)(solv)) (2-solv) is reported. The XANES spectrum shows that 1 remains five-coordinate in methanolic solution. Upon reaction of 1 with KO(2) in MeOH at -90 degrees C, an intermediate (3) is formed, which is characterized by a LMCT band centered at 452(2780) nm, and a low-spin state (S = 1/2), based on its axial EPR spectrum (g(perpendicular) = 2.14; g(parallel) = 1.97). Hydrogen peroxide is detected in this reaction, using both (1)H NMR spectroscopy and a catalase assay. Intermediate 3 is photolabile, so, in lieu of a Raman spectrum, IR was used to obtain vibrational data for 3. At low temperatures, a nu(O-O) Fermi doublet is observed in the IR at 788(2) and 781(2) cm(-)(1), which collapses into a single peak at 784 cm(-1) upon the addition of D(2)O. This vibrational peak diminishes in intensity over time and essentially disappears after 140 s. When 3 is generated using an (18)O-labeled isotopic mixture of K(18)O(2)/K(16)O(2) (23.28%), the vibration centered at 784 cm(-1) shifts to 753 cm(-1). This new vibrational peak is close to that predicted (740 cm(-1)) for a diatomic (18)O-(18)O stretch. In addition, a nu(O-O) vibrational peak assigned to free hydrogen peroxide is also observed (nu(O-O) = 854 cm(-1)) throughout the course of the reaction between Fe(II)-1 and superoxide and is strongest after 100 s. XAS studies indicate that 3 possesses one sulfur scatterer at 2.33(2) A and four nitrogen scatterers at 2.01(1) A. Addition of two Fe-O shells, each containing one oxygen, one at 1.86(3) A and one at 2.78(3) A, improved the EXAFS fits, suggesting that 3 is an end-on peroxo or hydroperoxo complex, Fe(III)(S(Me2)N(4)(tren))(OO(H)). Upon warming above -50 degrees C, 3 is converted to 2-MeOH. In methanol and methanol:THF (THF = tetrahydrofuran) solvent mixtures, 2-MeOH is characterized by a LMCT band at lambda(max) = 511(1765) nm, an intermediate spin-state (S = 3/2), and, on the basis of EXAFS, a relatively short Fe-O bond (assigned to a coordinated methanol or methoxide) at 1.94(10) A. Kinetic measurements in 9:1 THF:MeOH at 25 degrees C indicate that 3 is formed near the diffusion limit upon addition of HO(2) to 1 and converts to 2-MeOH at a rate of 65(1) s(-1), which is consistent with kinetic studies involving superoxide oxidation of the SOR iron site.

摘要

超氧化物还原酶(SORs)属于一类新型金属酶,通过将超氧化物还原为过氧化氢来降解超氧化物。这些酶含有一个催化铁位点,在催化过程中该位点在Fe(II)和Fe(III)状态之间循环。超氧化物还原的关键步骤被认为涉及HO(2)与Fe(II)结合,随后发生内球电子转移以生成Fe(III)-OO(H)中间体。本文报道了超氧化物诱导合成的亚铁SOR模型(Fe(II)(S(Me2)N(4)(tren)) (1))氧化生成Fe(III)(S(Me2)N(4)(tren)(solv)) (2-solv)的机制。X射线吸收近边结构(XANES)光谱表明,1在甲醇溶液中保持五配位。在-90℃下,1与KO(2)在甲醇中反应时,形成一种中间体(3),基于其轴向电子顺磁共振(EPR)光谱(g(垂直) = 2.14;g(平行) = 1.97),该中间体具有以452(2780) nm为中心的配体到金属电荷转移(LMCT)带以及低自旋态(S = 1/2)。使用核磁共振氢谱((1)H NMR)光谱和过氧化氢酶测定法在该反应中检测到了过氧化氢。中间体3对光不稳定,因此,代替拉曼光谱,使用红外光谱来获取3的振动数据。在低温下,在红外光谱中于788(2)和781(2) cm(-1)处观察到一个ν(O-O)费米双峰,加入重水(D(2)O)后该双峰合并为784 cm(-1)处的一个单峰。这个振动峰的强度随时间减弱,140 s后基本消失。当使用K(18)O(2)/K(16)O(2)的(18)O标记同位素混合物(23.28%)生成3时,以784 cm(-1)为中心的振动峰移至753 cm(-1)。这个新的振动峰接近双原子(18)O-(18)O伸缩振动预测的峰(740 cm(-1))。此外,在Fe(II)-1与超氧化物反应的整个过程中还观察到一个归属于游离过氧化氢的ν(O-O)振动峰(ν(O-O) = 854 cm(-1)),且在100 s后最强。X射线吸收光谱(XAS)研究表明,3在2.33(2) Å处有一个硫散射体,在2.01(1) Å处有四个氮散射体。添加两个Fe-O壳层,每个壳层包含一个氧,一个在1.86(3) Å,另一个在2.78(3) Å,改善了扩展X射线吸收精细结构(EXAFS)拟合,表明3是一个端基过氧或氢过氧配合物,即Fe(III)(S(Me2)N(4)(tren))(OO(H))。升温至-50℃以上时,3转化为2-MeOH。在甲醇以及甲醇与四氢呋喃(THF)的混合溶剂(THF = 四氢呋喃)中,2-MeOH的特征是在λ(max) = 511(1765) nm处有一个LMCT带,中间自旋态(S = 3/2),并且基于EXAFS,在1.94(10) Å处有一个相对较短的Fe-O键(归属于配位的甲醇或甲醇盐)。在25℃下于9:1的THF:MeOH中进行的动力学测量表明,向1中加入HO(2)时,3在接近扩散极限的情况下形成,并以65(1) s(-1)的速率转化为2-MeOH,这与涉及SOR铁位点超氧化物氧化的动力学研究一致。

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