Suppr超能文献

不断扩展的蛋白质世界及其源于生物大爆炸的起源。

Expanding protein universe and its origin from the biological Big Bang.

作者信息

Dokholyan Nikolay V, Shakhnovich Boris, Shakhnovich Eugene I

机构信息

Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA.

出版信息

Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14132-6. doi: 10.1073/pnas.202497999. Epub 2002 Oct 16.

Abstract

The bottom-up approach to understanding the evolution of organisms is by studying molecular evolution. With the large number of protein structures identified in the past decades, we have discovered peculiar patterns that nature imprints on protein structural space in the course of evolution. In particular, we have discovered that the universe of protein structures is organized hierarchically into a scale-free network. By understanding the cause of these patterns, we attempt to glance at the very origin of life.

摘要

自下而上理解生物体进化的方法是研究分子进化。在过去几十年中,随着大量蛋白质结构被识别出来,我们发现了自然在进化过程中烙印在蛋白质结构空间上的奇特模式。特别是,我们发现蛋白质结构的整体是分层组织成一个无标度网络的。通过理解这些模式的成因,我们试图窥探生命的真正起源。

相似文献

1
Expanding protein universe and its origin from the biological Big Bang.不断扩展的蛋白质世界及其源于生物大爆炸的起源。
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14132-6. doi: 10.1073/pnas.202497999. Epub 2002 Oct 16.
2
The architecture of the protein domain universe.蛋白质结构域的整体架构。
Gene. 2005 Mar 14;347(2):199-206. doi: 10.1016/j.gene.2004.12.020. Epub 2005 Feb 24.
3
Protostar formation in the early universe.早期宇宙中的原恒星形成。
Science. 2008 Aug 1;321(5889):669-71. doi: 10.1126/science.1160259.
5
On the origin and highly likely completeness of single-domain protein structures.关于单结构域蛋白质结构的起源及极有可能的完整性
Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2605-10. doi: 10.1073/pnas.0509379103. Epub 2006 Feb 14.

引用本文的文献

1
In silico evolution of globular protein folds from random sequences.从随机序列进行球状蛋白质折叠的计算机模拟进化
Proc Natl Acad Sci U S A. 2025 Jul 8;122(27):e2509015122. doi: 10.1073/pnas.2509015122. Epub 2025 Jun 30.
2
Evolving concepts of the protein universe.蛋白质世界的不断演变的概念。
iScience. 2025 Feb 13;28(3):112012. doi: 10.1016/j.isci.2025.112012. eCollection 2025 Mar 21.
5
Protein folds as synapomorphies of the tree of life.蛋白质折叠是生命之树的同源特征。
Evolution. 2022 Aug;76(8):1706-1719. doi: 10.1111/evo.14550. Epub 2022 Jul 13.
6
Genetic networks encode secrets of their past.遗传网络编码着它们过去的秘密。
J Theor Biol. 2022 May 21;541:111092. doi: 10.1016/j.jtbi.2022.111092. Epub 2022 Mar 17.
8
Experimentally-driven protein structure modeling.基于实验的蛋白质结构建模。
J Proteomics. 2020 May 30;220:103777. doi: 10.1016/j.jprot.2020.103777. Epub 2020 Apr 5.
10
Size and structure of the sequence space of repeat proteins.重复蛋白序列空间的大小和结构。
PLoS Comput Biol. 2019 Aug 15;15(8):e1007282. doi: 10.1371/journal.pcbi.1007282. eCollection 2019 Aug.

本文引用的文献

8
10
Structure of growing networks with preferential linking.具有优先连接的增长网络结构。
Phys Rev Lett. 2000 Nov 20;85(21):4633-6. doi: 10.1103/PhysRevLett.85.4633.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验