Suppr超能文献

探索来自医学文献数据库(MEDLINE)的文本挖掘。

Exploring text mining from MEDLINE.

作者信息

Srinivasan Padmini, Rindflesch Thomas

机构信息

University of Iowa, Iowa City, IA 52242, USA.

出版信息

Proc AMIA Symp. 2002:722-6.

Abstract

We present a text mining application that exploits the MeSH heading subheading combinations present in MEDLINE records. The process begins with a user specified pair of subheadings. Co-occurring concepts qualified by these subheadings are regarded as being conceptually related and thus extracted. A parallel process using SemRep, a linguistic tool, also extracts conceptually related concept pairs from the titles of MEDLINE records. The pairs extracted via MeSH and the pairs extracted via SemRep are compared to yield a high confidence subset. These pairs are then combined to project a summary view associated with the selected subheading pair. For each concept the "diversity" in the set of related concepts is assessed. We suggest that this summary and the diversity indicators will be useful a health care practitioner or researcher. We illustrate this application with the subheading pair "drug therapy" and "therapeutic use" which approximates the treatment relationship between Drugs and Diseases.

摘要

我们展示了一个文本挖掘应用程序,该程序利用了MEDLINE记录中存在的医学主题词(MeSH)标题副标题组合。该过程始于用户指定的一对副标题。由这些副标题限定的同时出现的概念被视为在概念上相关,因此被提取出来。使用语言工具SemRep的并行过程也从MEDLINE记录的标题中提取概念上相关的概念对。将通过MeSH提取的概念对与通过SemRep提取的概念对进行比较,以产生一个高置信度子集。然后将这些概念对组合起来,以呈现与所选副标题对相关的汇总视图。对于每个概念,评估相关概念集中的“多样性”。我们认为,这个汇总和多样性指标对医疗从业者或研究人员将是有用的。我们用副标题对“药物疗法”和“治疗用途”来说明这个应用程序,这近似于药物与疾病之间的治疗关系。

相似文献

1
Exploring text mining from MEDLINE.
Proc AMIA Symp. 2002:722-6.
2
MeSHmap: a text mining tool for MEDLINE.
Proc AMIA Symp. 2001:642-6.
3
Creative ways to locate MeSH subheading information.
Med Ref Serv Q. 1994 Spring;13(1):73-80. doi: 10.1300/J115V13N01_05.
4
MEDLINE and MeSH: challenges for end users.
Med Ref Serv Q. 1992 Fall;11(3):29-46. doi: 10.1300/J115V11N03_03.
5
Information content in Medline record fields.
Int J Med Inform. 2004 Jun 30;73(6):515-27. doi: 10.1016/j.ijmedinf.2004.02.008.
6
Distilling conceptual connections from MeSH co-occurrences.
Stud Health Technol Inform. 2004;107(Pt 2):808-12.
7
Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing.
AMIA Annu Symp Proc. 2015 Nov 5;2015:915-24. eCollection 2015.
8
Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project.
J Am Med Inform Assoc. 2013 May 1;20(3):446-52. doi: 10.1136/amiajnl-2012-001083. Epub 2012 Nov 29.
10
Criteria for evaluating alternative MEDLINE search engines.
Med Ref Serv Q. 1998 Fall;17(3):1-12. doi: 10.1300/J115v17n03_01.

引用本文的文献

1
Mining Proteome Research Reports: A Bird's Eye View.
Proteomes. 2021 Jun 10;9(2):29. doi: 10.3390/proteomes9020029.
4
Identifying Plant-Human Disease Associations in Biomedical Literature: A Case Study.
AMIA Jt Summits Transl Sci Proc. 2016 Jul 19;2016:84-93. eCollection 2016.
5
Knowledge Discovery from Biomedical Ontologies in Cross Domains.
PLoS One. 2016 Aug 22;11(8):e0160005. doi: 10.1371/journal.pone.0160005. eCollection 2016.
6
Immune modulators in disease: integrating knowledge from the biomedical literature and gene expression.
J Am Med Inform Assoc. 2016 May;23(3):617-26. doi: 10.1093/jamia/ocv166. Epub 2015 Dec 11.
7
Identifying plausible adverse drug reactions using knowledge extracted from the literature.
J Biomed Inform. 2014 Dec;52:293-310. doi: 10.1016/j.jbi.2014.07.011. Epub 2014 Jul 19.
8
Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis.
J Am Med Inform Assoc. 2014 Sep-Oct;21(5):925-37. doi: 10.1136/amiajnl-2014-002767. Epub 2014 Jun 13.
10
Literature retrieval and mining in bioinformatics: state of the art and challenges.
Adv Bioinformatics. 2012;2012:573846. doi: 10.1155/2012/573846. Epub 2012 Jun 21.

本文引用的文献

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验