Suihko M-L, Stackebrandt E
VTT Biotechnology, Espoo, Finland.
J Appl Microbiol. 2003;94(1):25-34. doi: 10.1046/j.1365-2672.2003.01803.x.
To identify aerobic mesophilic bacteria isolated from coreboard, kitchen roll paper and food packaging boards containing recycled fibres and to create a rapid fingerprint-based database for their identification.
A total of 197 isolates and 20 relevant type strains were characterized by automated ribotyping and as far as possible identified by the similarities of their riboprints to the relevant type strains. One strain from each unidentified ribotype, a total of 87 strains, was subjected to partial 16S rDNA sequencing and in most cases also to fatty acid analysis and physiological tests. From the isolates 113 and seven different ribotypes were generated belonging to the genera Bacillus and Paenibacillus, respectively. The dominating species, or closest related to them, were B. simplex (22.8% of isolates), B. licheniformis (18.3%) and B. amyloliquefaciens (12.7%); 5.1% of the isolates were identified as B. cereus, a potential food-borne pathogen. In particular, this species was present in one food packaging board (26.3% of isolates). Based on these results, 40.1% of the isolates and 45.0% of ribotypes were so different from the relevant type strains that they may represent novel species.
All isolates were aerobic spore-formers, indicating that all non-spore-formers were eliminated during the drying stage of the processes. Although many isolates could be affiliated to described species of Bacillus or Paenibacillus, a significant proportion of the isolates could not be identified unambiguously as members of a described species.
A RiboPrint identification database, composed of 120 composite patters, was established for bacteria originating from the pulp and paper industry. Considering the discrimination power of ribotyping, this database will be extremely useful in future for the reliable and rapid identification of bacteria isolated from pulp and paper industrial sources.
鉴定从含有回收纤维的芯板、厨房用纸和食品包装板中分离出的需氧嗜温细菌,并创建一个基于快速指纹图谱的数据库用于其鉴定。
通过自动核糖体分型对总共197株分离株和20株相关模式菌株进行了表征,并尽可能根据其核糖体图谱与相关模式菌株的相似性进行鉴定。从每个未鉴定的核糖体分型中选取一株菌株,共87株,进行部分16S rDNA测序,大多数情况下还进行脂肪酸分析和生理测试。从分离株中分别产生了属于芽孢杆菌属和类芽孢杆菌属的113种和7种不同的核糖体分型。优势菌种或与其最密切相关的菌种为简单芽孢杆菌(占分离株的22.8%)、地衣芽孢杆菌(18.3%)和解淀粉芽孢杆菌(12.7%);5.1%的分离株被鉴定为蜡样芽孢杆菌,一种潜在的食源性病原体。特别是,该菌种存在于一个食品包装板中(占分离株的26.3%)。基于这些结果,40.1%的分离株和45.0%的核糖体分型与相关模式菌株差异很大,可能代表新物种。
所有分离株均为需氧芽孢形成菌,表明在加工干燥阶段所有非芽孢形成菌均被消除。尽管许多分离株可归属于已描述的芽孢杆菌属或类芽孢杆菌属菌种,但仍有相当比例的分离株无法明确鉴定为已描述菌种的成员。
为源自 pulp and paper industry的细菌建立了一个由120种复合模式组成的核糖体分型鉴定数据库。考虑到核糖体分型的鉴别能力,该数据库在未来对于可靠、快速鉴定从 pulp and paper industrial sources分离出的细菌将极为有用。 (注:“pulp and paper industry”和“pulp and paper industrial sources”在上下文中未明确中文释义,保留英文待进一步结合具体行业知识理解)