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人类细胞中微小RNA加工及功能的序列要求。

Sequence requirements for micro RNA processing and function in human cells.

作者信息

Zeng Yan, Cullen Bryan R

机构信息

Howard Hughes Medical Institute, Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710, USA.

出版信息

RNA. 2003 Jan;9(1):112-23. doi: 10.1261/rna.2780503.


DOI:10.1261/rna.2780503
PMID:12554881
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1370375/
Abstract

Most eukaryotes encode a substantial number of small noncoding RNAs termed micro RNAs (miRNAs). Previously, we have demonstrated that miR-30, a 22-nucleotide human miRNA, can be processed from a longer transcript bearing the proposed miR-30 stem-loop precursor and can translationally inhibit an mRNA-bearing artificial target sites. We also demonstrated that the miR-30 precursor stem can be substituted with a heterologous stem, which can be processed to yield novel miRNAs and can block the expression of endogenous mRNAs. Here, we show that a second human miRNA, termed miR-21, can also be effectively expressed when its precursor forms part of a longer mRNA. For both miR-30 and miR-21, mature miRNA production was highly dependent on the integrity of the precursor RNA stem, although the underlying sequence had little effect. In contrast, the sequence of the terminal loop affected miRNA production only moderately. Processing of the initial, miR-30-containing transcript led to the production of not only mature miR-30 but also to the largely nuclear excision of an approximately 65-nucleotide RNA that is likely to represent an important intermediate in miR-30 processing. Consistent with this hypothesis, mutations that affected mature miR-30 production inhibited expression of this miR-30 pre-miRNA to an equivalent degree. Although point mutations could block the ability of both miR-30 and miR-21 to inhibit the translation of mRNAs bearing multiple artificial miRNA target sites, single point mutations only attenuated the miRNA-mediated inhibition of genes bearing single, fully complementary targets. These results suggest that miRNAs, and the closely similar small interfering RNAs, cannot totally discriminate between RNA targets differing by a single nucleotide.

摘要

大多数真核生物编码大量被称为微小RNA(miRNA)的小非编码RNA。此前,我们已经证明,miR-30,一种22个核苷酸的人类miRNA,可以从携带拟议的miR-30茎环前体的较长转录本加工而来,并且可以翻译抑制带有人工靶位点的mRNA。我们还证明,miR-30前体茎可以被异源茎替代,该异源茎可以被加工产生新的miRNA,并可以阻断内源性mRNA的表达。在这里,我们表明,另一种人类miRNA,称为miR-21,当其前体成为较长mRNA的一部分时,也可以有效表达。对于miR-30和miR-21,成熟miRNA的产生高度依赖于前体RNA茎的完整性,尽管基础序列影响很小。相比之下,末端环的序列仅适度影响miRNA的产生。最初的含miR-30转录本的加工不仅导致成熟miR-30的产生,还导致大约65个核苷酸RNA的大量核切除,该RNA可能代表miR-30加工中的重要中间体。与该假设一致,影响成熟miR-30产生的突变以同等程度抑制该miR-30前体miRNA的表达。虽然点突变可以阻断miR-30和miR-21抑制带有多个人工miRNA靶位点的mRNA翻译的能力,但单点突变仅减弱miRNA介导的对带有单个完全互补靶标的基因的抑制。这些结果表明,miRNA以及与之密切相似的小干扰RNA不能完全区分相差单个核苷酸的RNA靶标。

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本文引用的文献

[1]
MicroRNA maturation: stepwise processing and subcellular localization.

EMBO J. 2002-9-2

[2]
RNA interference in human cells is restricted to the cytoplasm.

RNA. 2002-7

[3]
Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells.

Mol Cell. 2002-6

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Curr Biol. 2002-4-30

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Nat Biotechnol. 2002-5

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Proc Natl Acad Sci U S A. 2002-4-30

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Proc Natl Acad Sci U S A. 2002-4-16

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Genes Dev. 2002-4-15

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Nucleic Acids Res. 2002-4-15

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Genes Dev. 2002-3-15

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