Tauch A, Schlüter A, Bischoff N, Goesmann A, Meyer F, Pühler A
Zentrum für Genomforschung, Universität Bielefeld, Universitätsstrasse 25, 33615, Bielefeld, Germany.
Mol Genet Genomics. 2003 Feb;268(5):570-84. doi: 10.1007/s00438-002-0785-z. Epub 2003 Jan 10.
Plasmid pB4 is a conjugative antibiotic resistance plasmid, originally isolated from a microbial community growing in activated sludge, by means of an exogenous isolation method with Pseudomonas sp. B13 as recipient. We have determined the complete nucleotide sequence of pB4. The plasmid is 79,370 bp long and contains at least 81 complete coding regions. A suite of coding regions predicted to be involved in plasmid replication, plasmid maintenance, and conjugative transfer revealed significant similarity to the IncP-1beta backbone of R751. Four resistance gene regions comprising mobile genetic elements are inserted in the IncP-1beta backbone of pB4. The modular 'gene load' of pB4 includes (1) the novel transposon Tn 5719 containing genes characteristic of chromate resistance determinants, (2) the transposon Tn 5393c carrying the widespread streptomycin resistance gene pair strA-strB, (3) the beta-lactam antibiotic resistance gene bla(NPS-1) flanked by highly conserved sequences characteristic of integrons, and (4) a tripartite antibiotic resistance determinant comprising an efflux protein of the resistance-nodulation-division (RND) family, a periplasmic membrane fusion protein (MFP), and an outer membrane factor (OMF). The components of the RND-MFP-OMF efflux system showed the highest similarity to the products of the mexCD-oprJ determinant from the Pseudomonas aeruginosa chromosome. Functional analysis of the cloned resistance region from pB4 in Pseudomonas sp. B13 indicated that the RND-MFP-OMF efflux system conferred high-level resistance to erythromycin and roxithromycin resistance on the host strain. This is the first example of an RND-MFP-OMF-type antibiotic resistance determinant to be found in a plasmid genome. The global genetic organization of pB4 implies that its gene load might be disseminated between bacteria in different habitats by the combined action of the conjugation apparatus and the mobility of its component elements.
质粒pB4是一种接合型抗生素抗性质粒,最初是通过以外源假单胞菌属B13为受体的分离方法,从活性污泥中生长的微生物群落中分离得到的。我们已经测定了pB4的完整核苷酸序列。该质粒长度为79,370 bp,包含至少81个完整的编码区。一组预计参与质粒复制、质粒维持和接合转移的编码区与R751的IncP-1β主干显示出显著的相似性。四个包含移动遗传元件的抗性基因区域插入到pB4的IncP-1β主干中。pB4的模块化“基因负载”包括:(1)含有铬抗性决定簇特征基因的新型转座子Tn 5719;(2)携带广泛存在的链霉素抗性基因对strA-strB的转座子Tn 5393c;(3)两侧带有整合子特征性高度保守序列的β-内酰胺抗生素抗性基因bla(NPS-1);(4)一个由抗性-结瘤-分裂(RND)家族的外排蛋白、周质膜融合蛋白(MFP)和外膜因子(OMF)组成的三联抗生素抗性决定簇。RND-MFP-OMF外排系统的组分与铜绿假单胞菌染色体上的mexCD-oprJ决定簇的产物显示出最高的相似性。对假单胞菌属B13中克隆的来自pB4的抗性区域进行功能分析表明,RND-MFP-OMF外排系统赋予宿主菌株对红霉素和罗红霉素的高水平抗性。这是在质粒基因组中发现的RND-MFP-OMF型抗生素抗性决定簇的首个实例。pB4的整体基因组织意味着其基因负载可能通过接合装置及其组成元件的移动性的联合作用,在不同生境的细菌之间传播。