Inobe Tomonao, Arai Munehito, Nakao Masaharu, Ito Kazuki, Kamagata Kiyoto, Makio Tadashi, Amemiya Yoshiyuki, Kihara Hiroshi, Kuwajima Kunihiro
Department of Physics, Graduate School of Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
J Mol Biol. 2003 Mar 14;327(1):183-91. doi: 10.1016/s0022-2836(03)00087-1.
We have studied the ATP-induced allosteric structural transition of GroEL using small angle X-ray scattering and fluorescence spectroscopy in combination with a stopped-flow technique. With X-ray scattering one can clearly distinguish the three allosteric states of GroEL, and the kinetics of the transition of GroEL induced by 85 microM ATP have been observed directly by stopped-flow X-ray scattering for the first time. The rate constant has been found to be 3-5s(-1) at 5 degrees C, indicating that this process corresponds to the second phase of the ATP-induced kinetics of tryptophan-inserted GroEL measured by stopped-flow fluorescence. Based on the ATP concentration dependence of the fluorescence kinetics, we conclude that the first phase represents bimolecular non-cooperative binding of ATP to GroEL with a bimolecular rate constant of 5.8 x 10(5)M(-1)s(-1) at 25 degrees C. Considering the electrostatic repulsion between negatively charged GroEL (-18 of the net charge per monomer at pH 7.5) and ATP, the rate constant is consistent with a diffusion-controlled bimolecular process. The ATP-induced fluorescence kinetics (the first and second phases) at various ATP concentrations (< 400 microM) occur before ATP hydrolysis by GroEL takes place and are well explained by a kinetic allosteric model, which is a combination of the conventional transition state theory and the Monod-Wyman-Changeux model, and we have successfully evaluated the equilibrium and kinetic parameters of the allosteric transition, including the binding constant of ATP in the transition state of GroEL.
我们结合停流技术,运用小角X射线散射和荧光光谱法研究了ATP诱导的GroEL变构结构转变。通过X射线散射能够清晰区分GroEL的三种变构状态,并且首次通过停流X射线散射直接观测到了85微摩尔ATP诱导的GroEL转变动力学。已发现在5摄氏度时速率常数为3 - 5秒⁻¹,这表明该过程对应于通过停流荧光法测量的ATP诱导的色氨酸插入型GroEL动力学的第二阶段。基于荧光动力学对ATP浓度的依赖性,我们得出结论,第一阶段代表ATP与GroEL的双分子非协同结合,在25摄氏度时双分子速率常数为5.8×10⁵摩尔⁻¹秒⁻¹。考虑到带负电荷的GroEL(在pH 7.5时每个单体净电荷为 - 18)与ATP之间的静电排斥,该速率常数与扩散控制的双分子过程一致。在不同ATP浓度(<400微摩尔)下,ATP诱导的荧光动力学(第一和第二阶段)发生在GroEL水解ATP之前,并且可以用动力学变构模型很好地解释,该模型是传统过渡态理论和莫诺 - 怀曼 - 尚热模型的组合,我们已成功评估了变构转变的平衡和动力学参数,包括GroEL过渡态中ATP的结合常数。