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A fractal clonotype distribution in the CD8+ memory T cell repertoire could optimize potential for immune responses.

作者信息

Naumov Yuri N, Naumova Elena N, Hogan Kevin T, Selin Liisa K, Gorski Jack

机构信息

Department of Pathology, University of Massachusetts Medical School, Worchester, MA 01655, USA.

出版信息

J Immunol. 2003 Apr 15;170(8):3994-4001. doi: 10.4049/jimmunol.170.8.3994.


DOI:10.4049/jimmunol.170.8.3994
PMID:12682227
Abstract

The nature of CD8(+) T cell memory is still incompletely understood. We have previously reported that the response to an HLA-A2-restricted influenza-derived peptide results in a complex T cell repertoire. In this study we extend this analysis and describe the repertoire with more rigor. In one individual we defined 141 distinct T cell clonotypes on the basis of the unique DNA sequence of the third complementarity-determining region of the TCR beta-chain. The frequency distribution of the clonotypes is not what is expected of a normal distribution but is characterized by a large low-frequency tail. The existence of a complex population indicates a mechanism for maintaining a large number of Ag-specific clonotypes at a low frequency in the memory pool. Ranking the clonotypes allowed us to describe the population in terms of a power law-like distribution with a parameter of decay of approximately 1.6. If the repertoire is divided into subsets, such as clonotypes that use BJ2.7 or those whose third complementarity-determining region encodes the amino acid sequence IRSS, the clonotype frequencies could also be described by a power law-like distribution. This indicates a self similarity to the repertoire in which smaller pieces are slightly altered copies of the larger piece. The power law-like description is stable with time and was observed in a second individual. The distribution of clonotypes in the repertoire could be mapped onto a polygonal spiral using a recursive algorithm. Self similarity, power laws, and recursive mapping algorithms are associated with fractal systems. Thus, Ag-specific memory CD8 T cell repertoires can be considered as fractal, which could indicate optimized flexibility and robustness.

摘要

相似文献

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A fractal clonotype distribution in the CD8+ memory T cell repertoire could optimize potential for immune responses.

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[7]
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[10]
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[3]
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[4]
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[8]
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[9]
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[10]
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