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从植物中分离核微卫星需要多少工作量?

How much effort is required to isolate nuclear microsatellites from plants?

作者信息

Squirrell J, Hollingsworth P M, Woodhead M, Russell J, Lowe A J, Gibby M, Powell W

机构信息

Royal Botanic Garden Edinburgh, 20 A Inverleith Row, Edinburgh, EH3 5LR, UK.

出版信息

Mol Ecol. 2003 Jun;12(6):1339-48. doi: 10.1046/j.1365-294x.2003.01825.x.

Abstract

The attributes of codominance, reproducibility and high resolution have all contributed towards the current popularity of nuclear microsatellites as genetic markers in molecular ecological studies. One of their major drawbacks, however, is the development phase required to obtain working primers for a given study species. To facilitate project planning, we have reviewed the literature to quantify the workload involved in isolating nuclear microsatellites from plants. We highlight the attrition of loci at each stage in the process, and the average effort required to obtain 10 working microsatellite primer pairs.

摘要

共显性、可重复性和高分辨率等特性都促使核微卫星作为分子生态学研究中的遗传标记在当前受到广泛欢迎。然而,它们的一个主要缺点是,对于特定的研究物种,需要经过开发阶段才能获得可用的引物。为了便于项目规划,我们查阅了文献,以量化从植物中分离核微卫星所涉及的工作量。我们强调了该过程中每个阶段基因座的损耗情况,以及获得10对可用的微卫星引物对所需的平均工作量。

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