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质粒DNA滚环扩增的原子力显微镜分析

Atomic force microscopy analysis of rolling circle amplification of plasmid DNA.

作者信息

Mizuta Ryushin, Mizuta Midori, Kitamura Daisuke

机构信息

Research Institute for Biological Sciences, Tokyo University of Science, Noda, Chiba, Japan.

出版信息

Arch Histol Cytol. 2003 May;66(2):175-81. doi: 10.1679/aohc.66.175.

DOI:10.1679/aohc.66.175
PMID:12846557
Abstract

Rolling circle amplification (RCA) of plasmid DNA using random hexamers and bacteriophage phi29 DNA polymerase is an increasingly applied technique for amplifying template DNA for DNA sequencing. We analyzed this RCA reaction at a single-molecular level by atomic force microscopy (AFM) and found that multibranched amplified products containing tandem repeats of a circle unit are formed within 1 h. We also used the RCA product of a GFP expression vector for the protein expression in cells, and found that the crude RCA product from one bacterial colony is sufficient for the GFP expression. Thus, the RCA reaction is useful in amplifying DNA for both DNA sequencing and protein expression.

摘要

使用随机六聚体和噬菌体phi29 DNA聚合酶对质粒DNA进行滚环扩增(RCA)是一种越来越多地应用于扩增用于DNA测序的模板DNA的技术。我们通过原子力显微镜(AFM)在单分子水平上分析了这种RCA反应,发现含有环状单元串联重复序列的多分支扩增产物在1小时内形成。我们还将绿色荧光蛋白(GFP)表达载体的RCA产物用于细胞中的蛋白质表达,发现来自一个细菌菌落的粗RCA产物足以用于GFP表达。因此,RCA反应在扩增用于DNA测序和蛋白质表达的DNA方面都很有用。

相似文献

1
Atomic force microscopy analysis of rolling circle amplification of plasmid DNA.质粒DNA滚环扩增的原子力显微镜分析
Arch Histol Cytol. 2003 May;66(2):175-81. doi: 10.1679/aohc.66.175.
2
Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification.使用Phi 29 DNA聚合酶和多重引物滚环扩增快速扩增质粒和噬菌体DNA。
Genome Res. 2001 Jun;11(6):1095-9. doi: 10.1101/gr.180501.
3
Usefulness of repeated GenomiPhi, a phi29 DNA polymerase-based rolling circle amplification kit, for generation of large amounts of plasmid DNA.重复使用GenomiPhi(一种基于phi29 DNA聚合酶的滚环扩增试剂盒)用于大量质粒DNA的制备的实用性。
Biomol Eng. 2005 Oct;22(4):129-32. doi: 10.1016/j.bioeng.2005.05.001.
4
TempliPhi, phi29 DNA polymerase based rolling circle amplification of templates for DNA sequencing.TempliPhi,基于phi29 DNA聚合酶的模板滚环扩增用于DNA测序。
Biotechniques. 2002 Jun;Suppl:44-7.
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Optimal DNA templates for rolling circle amplification revealed by in vitro selection.通过体外选择揭示的滚环扩增的最佳 DNA 模板。
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Cell-free protein synthesis using multiply-primed rolling circle amplification products.利用多重引物滚环扩增产物进行无细胞蛋白质合成。
Biotechniques. 2009 Jul;47(1):637-9. doi: 10.2144/000113171.
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Single-stranded DNA binding protein facilitates specific enrichment of circular DNA molecules using rolling circle amplification.单链DNA结合蛋白通过滚环扩增促进环状DNA分子的特异性富集。
Anal Biochem. 2009 Aug 15;391(2):81-4. doi: 10.1016/j.ab.2009.05.013. Epub 2009 May 12.
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Repeated GenomiPhi, phi29 DNA polymerase-based rolling circle amplification, is useful for generation of large amounts of plasmid DNA.重复进行基于phi29 DNA聚合酶的滚环扩增(GenomiPhi),可用于大量质粒DNA的生成。
Nucleic Acids Symp Ser (Oxf). 2004(48):147-8. doi: 10.1093/nass/48.1.147.
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Improvements of rolling circle amplification (RCA) efficiency and accuracy using Thermus thermophilus SSB mutant protein.利用嗜热栖热菌单链结合蛋白(SSB)突变体蛋白提高滚环扩增(RCA)的效率和准确性。
Nucleic Acids Res. 2006 May 17;34(9):e69. doi: 10.1093/nar/gkl350.
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Multiple displacement amplification products are compatible with recombination-based cloning.多重置换扩增产物与基于重组的克隆兼容。
Biotechniques. 2007 Jun;42(6):706, 708. doi: 10.2144/000112496.

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