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来自土壤杆菌属菌株ATCC31749的内膜(1→3)-β-D-葡聚糖(凝胶多糖)合酶的拓扑学特征

Topological characterization of an inner membrane (1-->3)-beta-D-glucan (curdlan) synthase from Agrobacterium sp. strain ATCC31749.

作者信息

Karnezis Tara, Epa V Chandana, Stone Bruce A, Stanisich Vilma A

机构信息

Department of Biochemistry, La Trobe University, Melbourne, Victoria 3086, Australia.

出版信息

Glycobiology. 2003 Oct;13(10):693-706. doi: 10.1093/glycob/cwg093. Epub 2003 Jul 8.

Abstract

The crdS gene of Agrobacterium sp. strain ATCC31749 encodes the curdlan synthase (CrdS) protein based on the homology of the derived CrdS protein sequence with those of beta-glycosyl transferases with repetitive action patterns (Stasinopoulos et al. [1999] Glycobiology, 9, 31-41). Here we show that chemical (NTG) mutagenesis of crdS abolishes curdlan production and the induced mutations can be complemented by a cloned crdS amplicon, thus providing genetic confirmation that crdS is essential for curdlan production. When expressed in the native Agrobacterium or in Escherichia coli, the largely hydrophobic CrdS protein exhibited an Mr of approximately 60 kDa (compared with the predicted mass of 73,121 Da) and was located in the inner membrane of both bacteria. By analyzing reciprocal fusions between crdS and the reporter genes, lacZ and phoA, and assessing the sensitivity of CrdS in spheroplasts to proteinase K, CrdS was shown to be an integral membrane protein with seven transmembrane helices and an Nout-Cin disposition. A central large and relatively hydrophilic cytoplasmic region carries the substrate-binding and catalytic D,D,D35QxxRW motif. The amino acid sequence of this domain of CrdS was threaded onto the 3D structure of the comparable domain of the SpsA protein, a member of the family GT-2 glycosyl transferases, and enabled the identification of corresponding amino acids involved in binding UDP in CrdS. Analysis of Agrobacterium membrane preparations using blue native-PAGE provided preliminary evidence that CrdS occurs in multimeric protein complexes of approximately 420 kDa and approximately 500 kDa.

摘要

基于衍生的凝结多糖合酶(CrdS)蛋白序列与具有重复作用模式的β-糖基转移酶的序列同源性,土壤杆菌属菌株ATCC31749的crdS基因编码凝结多糖合酶(CrdS)蛋白(Stasinopoulos等人,[1999]《糖生物学》,9,31 - 41)。在此我们表明,crdS的化学(NTG)诱变消除了凝结多糖的产生,并且诱导的突变可以被克隆的crdS扩增子互补,从而提供了crdS对于凝结多糖产生至关重要的遗传学证据。当在天然土壤杆菌或大肠杆菌中表达时,高度疏水的CrdS蛋白显示出约60 kDa的Mr(与预测质量73,121 Da相比),并且位于两种细菌的内膜中。通过分析crdS与报告基因lacZ和phoA之间的相互融合,并评估原生质球中CrdS对蛋白酶K的敏感性,CrdS被证明是一种具有七个跨膜螺旋且N端在胞外、C端在胞内排列的整合膜蛋白。一个中央的大且相对亲水的细胞质区域带有底物结合和催化的D,D,D35QxxRW基序。CrdS该结构域的氨基酸序列被嵌入到GT - 2糖基转移酶家族成员SpsA蛋白的可比结构域的三维结构中,从而能够鉴定CrdS中参与结合UDP的相应氨基酸。使用蓝色非变性聚丙烯酰胺凝胶电泳对土壤杆菌膜制剂进行分析提供了初步证据,表明CrdS存在于约420 kDa和约500 kDa的多聚体蛋白复合物中。

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