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1
Fast protein folding on downhill energy landscape.
Protein Sci. 2003 Aug;12(8):1801-3. doi: 10.1110/ps.0366103.
2
Folding simulations of a de novo designed protein with a betaalphabeta fold.
Biophys J. 2010 Jan 20;98(2):321-9. doi: 10.1016/j.bpj.2009.10.018.
4
One-dimensional barrier-preserving free-energy projections of a beta-sheet miniprotein: new insights into the folding process.
J Phys Chem B. 2008 Jul 24;112(29):8701-14. doi: 10.1021/jp711864r. Epub 2008 Jul 1.
7
Computer simulations of protein folding by targeted molecular dynamics.
Proteins. 2000 May 15;39(3):252-60. doi: 10.1002/(sici)1097-0134(20000515)39:3<252::aid-prot80>3.0.co;2-3.
8
Folding cooperativity in a three-stranded beta-sheet model.
J Mol Biol. 2005 Sep 16;352(2):370-81. doi: 10.1016/j.jmb.2005.07.036.
9
Absolute comparison of simulated and experimental protein-folding dynamics.
Nature. 2002 Nov 7;420(6911):102-6. doi: 10.1038/nature01160. Epub 2002 Oct 20.

引用本文的文献

1
Downhill, Ultrafast and Fast Folding Proteins Revised.
Int J Mol Sci. 2020 Oct 15;21(20):7632. doi: 10.3390/ijms21207632.
2
Crowding effects on the small, fast-folding protein lambda6-85.
Faraday Discuss. 2012;157:451-62; discussion 475-500. doi: 10.1039/c2fd20009k.
3
Behind the folding funnel diagram.
Nat Chem Biol. 2011 Jun 17;7(7):401-4. doi: 10.1038/nchembio.565.
4
6
CHARMM: the biomolecular simulation program.
J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287.
7
Comparison of sequence-based and structure-based energy functions for the reversible folding of a peptide.
Biophys J. 2005 May;88(5):3158-66. doi: 10.1529/biophysj.104.055335. Epub 2005 Mar 4.
8
Barrier-limited, microsecond folding of a stable protein measured with hydrogen exchange: Implications for downhill folding.
Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15639-44. doi: 10.1073/pnas.0404895101. Epub 2004 Oct 25.
9
Conformational transitions and glycation of serum albumin in patients with minimal-change glomerulopathy.
Korean J Intern Med. 2004 Sep;19(3):141-8. doi: 10.3904/kjim.2004.19.3.141.

本文引用的文献

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The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State.
Angew Chem Int Ed Engl. 2001 Jan 19;40(2):351-355. doi: 10.1002/1521-3773(20010119)40:2<351::AID-ANIE351>3.0.CO;2-6.
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Reply.
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Molecular dynamics simulations of protein folding from the transition state.
Proc Natl Acad Sci U S A. 2002 May 14;99(10):6719-24. doi: 10.1073/pnas.092686399. Epub 2002 Apr 30.
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Evaluation of a fast implicit solvent model for molecular dynamics simulations.
Proteins. 2002 Jan 1;46(1):24-33. doi: 10.1002/prot.10001.
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Role of native topology investigated by multiple unfolding simulations of four SH3 domains.
J Mol Biol. 2001 May 25;309(1):285-98. doi: 10.1006/jmbi.2001.4552.
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Native topology or specific interactions: what is more important for protein folding?
J Mol Biol. 2001 Mar 2;306(4):837-50. doi: 10.1006/jmbi.2000.4400.
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Folding simulations of a three-stranded antiparallel beta -sheet peptide.
Proc Natl Acad Sci U S A. 2000 Sep 26;97(20):10780-5. doi: 10.1073/pnas.190324897.
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Fast kinetics and mechanisms in protein folding.
Annu Rev Biophys Biomol Struct. 2000;29:327-59. doi: 10.1146/annurev.biophys.29.1.327.

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