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犰狳(异关节总目,犰狳科)的分子系统学:线粒体和核基因的最大似然法与贝叶斯分析的贡献

Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes.

作者信息

Delsuc Frédéric, Stanhope Michael J, Douzery Emmanuel J P

机构信息

Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l'Evolution, Université Montpellier II, Montpellier, France.

出版信息

Mol Phylogenet Evol. 2003 Aug;28(2):261-75. doi: 10.1016/s1055-7903(03)00111-8.

Abstract

The 30 living species of armadillos, anteaters, and sloths (Mammalia: Xenarthra) represent one of the three major clades of placentals. Armadillos (Cingulata: Dasypodidae) are the earliest and most speciose xenarthran lineage with 21 described species. The question of their tricky phylogeny was here studied by adding two mitochondrial genes (NADH dehydrogenase subunit 1 [ND1] and 12S ribosomal RNA [12S rRNA]) to the three protein-coding nuclear genes (alpha2B adrenergic receptor [ADRA2B], breast cancer susceptibility exon 11 [BRCA1], and von Willebrand factor exon 28 [VWF]) yielding a total of 6869 aligned nucleotide sites for thirteen xenarthran species. The two mitochondrial genes were characterized by marked excesses of transitions over transversions-with a strong bias toward CT transitions for the 12S rRNA-and exhibited two- to fivefold faster evolutionary rates than the fastest nuclear gene (ADRA2B). Maximum likelihood and Bayesian phylogenetic analyses supported the monophyly of Dasypodinae, Tolypeutinae, and Euphractinae, with the latter two armadillo subfamilies strongly clustering together. Conflicting branching points between individual genes involved relationships within the subfamilies Tolypeutinae and Euphractinae. Owing to a greater number of informative sites, the overall concatenation favored the mitochondrial topology with the classical grouping of Cabassous and Priodontes within Tolypeutinae, and a close relationship between Euphractus and Chaetophractus within Euphractinae. However, low statistical support values associated with almost equal distributions of apomorphies among alternatives suggested that two parallel events of rapid speciation occurred within these two armadillo subfamilies.

摘要

犰狳、食蚁兽和树懒这30种现存物种(哺乳纲:异关节总目)代表了胎盘类动物的三大主要分支之一。犰狳(有甲目:犰狳科)是最早且种类最多的异关节总目谱系,已描述的物种有21种。本文通过在三个蛋白质编码核基因(α2B肾上腺素能受体[ADRA2B]、乳腺癌易感基因外显子11[BRCA1]和血管性血友病因子外显子28[VWF])的基础上增加两个线粒体基因(NADH脱氢酶亚基1[ND1]和12S核糖体RNA[12S rRNA]),对其复杂的系统发育问题进行了研究,得到了13种异关节总目物种共6869个比对核苷酸位点。这两个线粒体基因的特点是转换明显多于颠换,12S rRNA对CT转换有强烈偏好,并且进化速度比最快的核基因(ADRA2B)快两到五倍。最大似然法和贝叶斯系统发育分析支持犰狳亚科、三绊犰狳亚科和倭犰狳亚科的单系性,后两个犰狳亚科紧密聚类在一起。各基因之间相互冲突的分支点涉及三绊犰狳亚科和倭犰狳亚科内部的关系。由于信息位点数量更多,总体串联分析支持线粒体拓扑结构,即三绊犰狳亚科内的卡巴苏犰狳属和大犰狳属的经典分组,以及倭犰狳亚科内的倭犰狳属和披毛犰狳属的密切关系。然而,与替代方案之间几乎相等的衍征分布相关的低统计支持值表明,这两个犰狳亚科内发生了两次平行的快速物种形成事件。

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