Yang Hongying, Roberts Mary F
Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467, USA.
Protein Sci. 2003 Sep;12(9):2087-98. doi: 10.1110/ps.03192503.
A kinetic comparison of the hydrolase and transferase activities of two bacterial phospholipase D (PLD) enzymes with little sequence homology provides insights into mechanistic differences and also the more general role of Ca(2+) in modulating PLD reactions. Although the two PLDs exhibit similar substrate specificity (phosphatidylcholine preferred), sensitivity to substrate aggregation or Ca(2+), and pH optima are quite distinct. Streptomyces sp. PMF PLD, a member of the PLD superfamily, generates both hydrolase and transferase products in parallel, consistent with a mechanism that proceeds through a covalent phosphatidylhistidyl intermediate where the rate-limiting step is formation of the covalent intermediate. For Streptomyces chromofuscus PLD, the two reactions exhibit different pH profiles, a result consistent with a mechanism likely to involve direct attack of water or an alcohol on the phosphorus. Ca(2+), not required for monomer or micelle hydrolysis, can activate both PLDs for hydrolysis of PC unilamellar vesicles. In the case of Streptomyces sp. PMF PLD, Ca(2+) relieves product inhibition by interactions with the phosphatidic acid (PA). A similar rate enhancement could occur with other HxKx(4)D-motif PLDs as well. For S. chromofuscus PLD, Ca(2+) is absolutely critical for binding of the enzyme to PC vesicles and for PA activation. That the Ca(2+)-PA activation involves a discreet site on the protein is suggested by the observation that the identity of the C-terminal residue in S. chromofuscus PLD can modulate the extent of product activation.
对两种序列同源性较低的细菌磷脂酶D(PLD)的水解酶和转移酶活性进行动力学比较,有助于深入了解其机制差异,以及Ca(2+)在调节PLD反应中的更普遍作用。尽管这两种PLD表现出相似的底物特异性(优先选择磷脂酰胆碱),但对底物聚集或Ca(2+)的敏感性以及最适pH值却截然不同。链霉菌属PMF PLD是PLD超家族的一员,能同时平行产生水解酶和转移酶产物,这与通过共价磷脂酰组氨酰中间体进行的机制一致,其中限速步骤是共价中间体的形成。对于暗产色链霉菌PLD,这两种反应表现出不同的pH谱,这一结果与可能涉及水或醇直接攻击磷的机制一致。单体或胶束水解不需要Ca(2+),但Ca(2+)可激活这两种PLD对PC单层囊泡的水解。就链霉菌属PMF PLD而言,Ca(2+)通过与磷脂酸(PA)相互作用缓解产物抑制。其他具有HxKx(4)D基序的PLD也可能出现类似的速率增强。对于暗产色链霉菌PLD,Ca(2+)对于酶与PC囊泡的结合以及PA激活绝对至关重要。暗产色链霉菌PLD C末端残基的身份可调节产物激活程度,这一观察结果表明Ca(2+)-PA激活涉及蛋白质上的一个离散位点。