Wang Minmin, Thomas Jeffrey, Burris Thomas P, Schkeryantz Jeffrey, Michael Laura F
Department of Discovery Chemistry Research and Technologies, Eli Lilly & Company, Lilly Research Laboratories, DC 1513, Indianapolis, IN 46285, USA.
J Mol Graph Model. 2003 Nov;22(2):173-81. doi: 10.1016/S1093-3263(03)00159-1.
Liver X receptors (LXRs) are nuclear receptors that participate in the regulation of cholesterol, bile acid, and glucose metabolism. Despite the identification of the natural oxysterol and nonsteroidal ligands for LXRalpha, little is known about the structure of the LXRalpha ligand-binding domain (LBD). We constructed a three-dimensional (3D) homology model of the LBD of LXRalpha based on the crystal structure of the retinoic acid receptor gamma (RARgamma) and all-trans retinoic acid complex. We combined molecular modeling and classical structure-function techniques to define the interactions between the LBD and three structurally diverse ligands, 22(R)-hydroxycholesterol (22RHC), N-(2,2,2-trifluoro-ethyl)-N-[4-(2,2,2-trifluoro-1-hydroxy-1-trifluoromethyl-ethyl)-phenyl]-benzenesulfonamide (T0901317) and (3-[3-[(2-chloro-3-trifluoromethyl-benzyl)-(2,2-diphenyl-ethyl)-amino]-propoxy]-phenyl)-acetic acid (GW3965). Sixteen individual amino acid point mutations were made in the predicted ligand-binding cavity of the LBD, and each of these mutant receptors was assessed for their ability to be activated by these three ligands. The majority of individual mutations resulted in lack of activation by all three ligands. Two residues were identified that resulted in a significant increase in basal activity while retaining responsiveness to the ligands. Interestingly, a number of residues were identified that appear to be selective in their response to a particular ligand, indicating that these three ligands recognize distinct structural components within the ligand-binding cavity. These data, together with our docking study, enable us to identify the amino acids that coordinate the interaction of both steroidal and non-steroidal ligands in the ligand-binding pocket of LXRalpha.
肝脏X受体(LXRs)是参与胆固醇、胆汁酸和葡萄糖代谢调节的核受体。尽管已鉴定出LXRα的天然氧化甾醇和非甾体配体,但对LXRα配体结合域(LBD)的结构了解甚少。我们基于视黄酸受体γ(RARγ)与全反式视黄酸复合物的晶体结构构建了LXRα LBD的三维(3D)同源模型。我们结合分子建模和经典的结构-功能技术来确定LBD与三种结构不同的配体22(R)-羟基胆固醇(22RHC)、N-(2,2,2-三氟乙基)-N-[4-(2,2,2-三氟-1-羟基-1-三氟甲基乙基)-苯基]-苯磺酰胺(T0901317)和(3-[3-[(2-氯-3-三氟甲基苄基)-(2,2-二苯基乙基)-氨基]-丙氧基]-苯基)-乙酸(GW3965)之间的相互作用。在LBD的预测配体结合腔内进行了16个单个氨基酸点突变,并评估了每个突变受体被这三种配体激活的能力。大多数单个突变导致这三种配体均无法激活。鉴定出两个残基,它们导致基础活性显著增加,同时保留对配体的反应性。有趣的是,鉴定出许多残基似乎对特定配体的反应具有选择性,这表明这三种配体识别配体结合腔内不同的结构成分。这些数据,连同我们的对接研究,使我们能够确定在LXRα的配体结合口袋中协调甾体和非甾体配体相互作用的氨基酸。