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结合有药物分子的人磷酸二酯酶5催化结构域的结构

Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules.

作者信息

Sung Byung-Je, Hwang Kwang Yeon, Jeon Young Ho, Lee J I, Heo Yong-Seok, Kim Jin Hwan, Moon Jinho, Yoon Jung Min, Hyun Young-Lan, Kim Eunmi, Eum Sung Jin, Park Sam-Yong, Lee Jie-Oh, Lee Tae Gyu, Ro Seonggu, Cho Joong Myung

机构信息

Division of Drug Discovery, CrystalGenomics, Inc., Daedeok Biocommunity, Jeonmin-dong, Yuseong-gu, Daejeon, 305-390, South Korea.

出版信息

Nature. 2003 Sep 4;425(6953):98-102. doi: 10.1038/nature01914.

DOI:10.1038/nature01914
PMID:12955149
Abstract

Phosphodiesterases (PDEs) are a superfamily of enzymes that degrade the intracellular second messengers cyclic AMP and cyclic GMP. As essential regulators of cyclic nucleotide signalling with diverse physiological functions, PDEs are drug targets for the treatment of various diseases, including heart failure, depression, asthma, inflammation and erectile dysfunction. Of the 12 PDE gene families, cGMP-specific PDE5 carries out the principal cGMP-hydrolysing activity in human corpus cavernosum tissue. It is well known as the target of sildenafil citrate (Viagra) and other similar drugs for the treatment of erectile dysfunction. Despite the pressing need to develop selective PDE inhibitors as therapeutic drugs, only the cAMP-specific PDE4 structures are currently available. Here we present the three-dimensional structures of the catalytic domain (residues 537-860) of human PDE5 complexed with the three drug molecules sildenafil, tadalafil (Cialis) and vardenafil (Levitra). These structures will provide opportunities to design potent and selective PDE inhibitors with improved pharmacological profiles.

摘要

磷酸二酯酶(PDEs)是一类可降解细胞内第二信使环磷酸腺苷(cAMP)和环磷酸鸟苷(cGMP)的酶超家族。作为具有多种生理功能的环核苷酸信号传导的重要调节因子,PDEs是治疗包括心力衰竭、抑郁症、哮喘、炎症和勃起功能障碍在内的各种疾病的药物靶点。在12个PDE基因家族中,cGMP特异性PDE5在人海绵体组织中发挥主要的cGMP水解活性。它是枸橼酸西地那非(伟哥)和其他类似药物治疗勃起功能障碍的靶点。尽管迫切需要开发选择性PDE抑制剂作为治疗药物,但目前只有cAMP特异性PDE4的结构可用。在此,我们展示了人PDE5催化结构域(537-860位氨基酸残基)与三种药物分子西地那非、他达拉非(希爱力)和伐地那非(艾力达)复合的三维结构。这些结构将为设计具有改善药理学特性的强效和选择性PDE抑制剂提供机会。

相似文献

1
Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules.结合有药物分子的人磷酸二酯酶5催化结构域的结构
Nature. 2003 Sep 4;425(6953):98-102. doi: 10.1038/nature01914.
2
Radiolabeled ligand binding to the catalytic or allosteric sites of PDE5 and PDE11.放射性标记配体与磷酸二酯酶5(PDE5)和磷酸二酯酶11(PDE11)的催化位点或变构位点结合。
Methods Mol Biol. 2005;307:239-62. doi: 10.1385/1-59259-839-0:239.
3
Binding of tritiated sildenafil, tadalafil, or vardenafil to the phosphodiesterase-5 catalytic site displays potency, specificity, heterogeneity, and cGMP stimulation.氚标记的西地那非、他达拉非或伐地那非与磷酸二酯酶-5催化位点的结合表现出效力、特异性、异质性及环磷酸鸟苷(cGMP)刺激作用。
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Critical amino acids in phosphodiesterase-5 catalytic site that provide for high-affinity interaction with cyclic guanosine monophosphate and inhibitors.磷酸二酯酶-5催化位点中的关键氨基酸,其与环磷酸鸟苷和抑制剂具有高亲和力相互作用。
Biochemistry. 2007 Nov 27;46(47):13554-63. doi: 10.1021/bi7010702. Epub 2007 Nov 3.
5
High biochemical selectivity of tadalafil, sildenafil and vardenafil for human phosphodiesterase 5A1 (PDE5) over PDE11A4 suggests the absence of PDE11A4 cross-reaction in patients.他达拉非、西地那非和伐地那非对人磷酸二酯酶5A1(PDE5)的生化选择性高于PDE11A4,这表明患者不存在PDE11A4交叉反应。
Int J Impot Res. 2005 Jan-Feb;17(1):5-9. doi: 10.1038/sj.ijir.3901283.
6
A 46-amino acid segment in phosphodiesterase-5 GAF-B domain provides for high vardenafil potency over sildenafil and tadalafil and is involved in phosphodiesterase-5 dimerization.磷酸二酯酶-5 GAF-B结构域中的一段46个氨基酸的片段赋予伐地那非比西地那非和他达拉非更高的效力,并且参与磷酸二酯酶-5的二聚化。
Mol Pharmacol. 2006 Nov;70(5):1822-31. doi: 10.1124/mol.106.028688. Epub 2006 Aug 22.
7
Conversion of phosphodiesterase-5 (PDE5) catalytic site to higher affinity by PDE5 inhibitors.磷酸二酯酶-5(PDE5)抑制剂将磷酸二酯酶-5(PDE5)催化位点转化为更高亲和力。
J Pharmacol Exp Ther. 2007 Nov;323(2):730-7. doi: 10.1124/jpet.107.126540. Epub 2007 Aug 9.
8
Tyrosine-612 in PDE5 contributes to higher affinity for vardenafil over sildenafil.磷酸二酯酶5(PDE5)中的酪氨酸-612导致其对伐地那非的亲和力高于西地那非。
Int J Impot Res. 2006 May-Jun;18(3):251-7. doi: 10.1038/sj.ijir.3901411.
9
Tadalafil and vardenafil.他达拉非和伐地那非。
Nat Rev Drug Discov. 2004 Apr;3(4):295-6. doi: 10.1038/nrd1362.
10
Phosphodiesterase-5 Gln817 is critical for cGMP, vardenafil, or sildenafil affinity: its orientation impacts cGMP but not cAMP affinity.磷酸二酯酶-5的Gln817对环磷酸鸟苷(cGMP)、伐地那非或西地那非的亲和力至关重要:其取向影响cGMP的亲和力,但不影响环磷酸腺苷(cAMP)的亲和力。
J Biol Chem. 2006 Mar 3;281(9):5553-8. doi: 10.1074/jbc.M510372200. Epub 2006 Jan 5.

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