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分支寡核苷酸可诱导突变型增强绿色荧光蛋白报告基因在体内发生基因转换。

Branched oligonucleotides induce in vivo gene conversion of a mutated EGFP reporter.

作者信息

Olsen P A, McKeen C, Krauss S

机构信息

Section for Genetic Therapy, Institute of Microbiology, The National Hospital, Oslo, Norway.

出版信息

Gene Ther. 2003 Oct;10(21):1830-40. doi: 10.1038/sj.gt.3302079.

DOI:10.1038/sj.gt.3302079
PMID:12960973
Abstract

Branched oligonucleotides (b-oligonucleotides) based on a novel branching monomer were used for site-specific sequence alteration in vivo. With a stable integrated mutated enhanced green fluorescent protein (EGFP) template in Chinese hamster ovary cells, up to 0.1% EGFP-positive cells were counted after transfection with b-oligonucleotides. The presence of EGFP protein in converted cells was demonstrated by anti-EGFP immunocytochemistry. Genomic sequencing of converted cells showed in 40% of the analysed clones the corrected wild-type codon, while 9.3% of the sequences showed a corrected wild-type sequence and an additional collateral mutation. Despite the stable corrected genomic locus, converted cells entered selective apoptosis after 3-6 days. The cell line Irs-1 that is deficient in the homologous recombination pathway showed a reduced frequency of b-oligonucleotide-induced site-specific sequence conversion. The reduced conversion rates in the mutant cell line could be partly rescued by complementation with XRCC2 cDNA.

摘要

基于一种新型分支单体的分支寡核苷酸(b-寡核苷酸)被用于体内位点特异性序列改变。在中国仓鼠卵巢细胞中,利用稳定整合的突变型增强绿色荧光蛋白(EGFP)模板,用b-寡核苷酸转染后,计数发现高达0.1%的细胞为EGFP阳性。通过抗EGFP免疫细胞化学证明了转化细胞中存在EGFP蛋白。对转化细胞进行基因组测序,在40%的分析克隆中显示校正后的野生型密码子,而9.3%的序列显示校正后的野生型序列和一个额外的附带突变。尽管基因组位点得到了稳定校正,但转化细胞在3 - 6天后进入选择性凋亡。在同源重组途径缺陷的Irs-1细胞系中,b-寡核苷酸诱导的位点特异性序列转化频率降低。突变细胞系中转化率的降低可通过用XRCC2 cDNA互补得到部分挽救。

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Branched oligonucleotides induce in vivo gene conversion of a mutated EGFP reporter.分支寡核苷酸可诱导突变型增强绿色荧光蛋白报告基因在体内发生基因转换。
Gene Ther. 2003 Oct;10(21):1830-40. doi: 10.1038/sj.gt.3302079.
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Strand bias influences the mechanism of gene editing directed by single-stranded DNA oligonucleotides.链偏向影响单链 DNA 寡核苷酸指导的基因编辑机制。
Nucleic Acids Res. 2011 Jun;39(11):4783-94. doi: 10.1093/nar/gkr061. Epub 2011 Feb 22.
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Enhanced gene repair mediated by methyl-CpG-modified single-stranded oligonucleotides.甲基化 CpG 修饰的单链寡核苷酸增强的基因修复。
Nucleic Acids Res. 2009 Dec;37(22):7468-82. doi: 10.1093/nar/gkp757.
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DNA breakage associated with targeted gene alteration directed by DNA oligonucleotides.与DNA寡核苷酸介导的靶向基因改变相关的DNA断裂
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Targeted gene knock in and sequence modulation mediated by a psoralen-linked triplex-forming oligonucleotide.由补骨脂素连接的三链形成寡核苷酸介导的靶向基因敲入和序列调控。
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BMC Mol Biol. 2008 Jan 28;9:14. doi: 10.1186/1471-2199-9-14.
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