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新型多巴胺D2受体拮抗剂NCQ 115((R)-N-[[1-(4-氟苄基)-2-吡咯烷基]甲基]-5-溴-2,3-二甲氧基苯甲酰胺)一水合盐酸盐的分子结构与晶体结构

Molecular and crystal structure of the hydrochloride monohydrate of (R)-N-[[1-(4-fluorobenzyl)-2-pyrrolidinyl]methyl]-5-bromo-2,3- dimethoxybenzamide, NCQ 115, a novel dopamine D2 receptor antagonist.

作者信息

Csöregh I, Högberg T

机构信息

Department of Structural Chemistry, Arrhenius Laboratory, Stockholm University, Sweden.

出版信息

Acta Pharm Nord. 1992;4(1):1-4.

PMID:1387534
Abstract

The structure and absolute configuration of the title compound have been determined by single crystal X-ray diffraction analysis. The space group symmetry is R21; the monoclinic unit cell contains two molecules and has the dimensions a = 12.4291(8), b = 7.4511(5), c = 12.7854(7) angstroms and beta = 102.295(7) degrees. The planar conformation of the benzamide moiety is stabilized by an intramolecular (N)H...O bond. Hydrogen bonds connect the chloride anion to the protonated pyrrolidine N atom, and also the crystal water to the carbonyl oxygen of the amide group. The molecule has a folded conformation in which the N-fluorobenzyl substituent of the pyrrolidine ring and the H-bonded pseudo ring of the benzamide moiety are arranged in a sandwich-like manner. In the crystal, intermolecular hydrogen bonds link the drug molecules via the chloride anion and the hydrate molecule into endless helical chains around the twofold axis. The absolute configuration was determined by comparison of the wRtot values, 0.037 and 0.040, calculated using all measured 2027 unique, non-zero reflections and assuming R and S configuration for the chiral center, respectively. Refinement of the structural model with an R configuration resulted in the final indices of R = 0.031 and wR = 0.033 for 1512 reflections with I/delta(I) greater than 3.

摘要

通过单晶X射线衍射分析确定了标题化合物的结构和绝对构型。空间群对称性为R21;单斜晶胞包含两个分子,其尺寸为a = 12.4291(8)、b = 7.4511(5)、c = 12.7854(7)埃,β = 102.295(7)度。苯甲酰胺部分的平面构象通过分子内(N)H...O键得以稳定。氢键将氯离子阴离子连接到质子化的吡咯烷N原子上,同时也将结晶水连接到酰胺基团的羰基氧上。该分子具有折叠构象,其中吡咯烷环的N-氟苄基取代基和苯甲酰胺部分的氢键假环以三明治状排列。在晶体中,分子间氢键通过氯离子阴离子和水合分子将药物分子连接成围绕二重轴的无限螺旋链。通过比较分别使用所有测量的2027个独特的非零反射并假设手性中心为R和S构型计算得到的wRtot值0.037和0.040来确定绝对构型。对具有R构型的结构模型进行精修,对于1512个I/δ(I)大于3的反射,最终的R指数为0.031,wR指数为0.033。

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