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Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm.

作者信息

Kuszewski J, Nilges M, Brünger A T

出版信息

J Biomol NMR. 1992 Jan;2(1):33-56. doi: 10.1007/BF02192799.

DOI:10.1007/BF02192799
PMID:1422145
Abstract
摘要

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Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance.用于通过核磁共振测量分子内质子-质子距离约束来研究蛋白质构象的20种常见氨基酸的伪结构。
J Mol Biol. 1983 Oct 5;169(4):949-61. doi: 10.1016/s0022-2836(83)80144-2.
2
Three-dimensional structure of a DNA hairpin in solution: two-dimensional NMR studies and distance geometry calculations on d(CGCGTTTTCGCG).溶液中DNA发夹的三维结构：对d(CGCGTTTTCGCG)的二维核磁共振研究和距离几何计算
Biochemistry. 1986 Sep 9;25(18):5341-50. doi: 10.1021/bi00366a053.
3
巨细胞病毒蛋白 vMIA 抑制 Bax 的结构机制。
Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20901-6. doi: 10.1073/pnas.1217094110. Epub 2012 Dec 3.
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Optimal contact definition for reconstruction of contact maps.最佳接触定义用于重建接触图谱。
BMC Bioinformatics. 2010 May 27;11:283. doi: 10.1186/1471-2105-11-283.
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A self-organizing algorithm for modeling protein loops.一种用于蛋白质环建模的自组织算法。
PLoS Comput Biol. 2009 Aug;5(8):e1000478. doi: 10.1371/journal.pcbi.1000478. Epub 2009 Aug 21.
6
Solution NMR structure of selenium-binding protein from Methanococcus vannielii.万氏甲烷球菌硒结合蛋白的溶液核磁共振结构
J Biol Chem. 2008 Sep 19;283(38):25936-43. doi: 10.1074/jbc.M803773200. Epub 2008 Jul 23.
7
Interactions between the plasma membrane and the antimicrobial peptide HP (2-20) and its analogues derived from Helicobacter pylori.质膜与抗菌肽HP（2-20）及其源自幽门螺杆菌的类似物之间的相互作用。
Biochem J. 2006 Feb 15;394(Pt 1):105-14. doi: 10.1042/BJ20051574.
8
Inhibitory effect of 2'-substituted nucleosides on hepatitis C virus replication correlates with metabolic properties in replicon cells.2'-取代核苷对丙型肝炎病毒复制的抑制作用与复制子细胞中的代谢特性相关。
Antimicrob Agents Chemother. 2005 May;49(5):2050-8. doi: 10.1128/AAC.49.5.2050-2058.2005.
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A naphthyridine carboxamide provides evidence for discordant resistance between mechanistically identical inhibitors of HIV-1 integrase.一种萘啶羧酰胺为HIV-1整合酶机制相同的抑制剂之间的不一致耐药性提供了证据。
Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11233-8. doi: 10.1073/pnas.0402357101. Epub 2004 Jul 26.
10
Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions.利用柔性环模拟物将φ值分析扩展到二级结构相互作用。
Proc Natl Acad Sci U S A. 2001 Nov 6;98(23):13008-13. doi: 10.1073/pnas.221467398. Epub 2001 Oct 30.
Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations.
通过混合距离几何-动力学模拟退火计算从质子间距离数据确定蛋白质的三维结构。
FEBS Lett. 1988 Mar 14;229(2):317-24. doi: 10.1016/0014-5793(88)81148-7.
4
Solution conformations of human growth hormone releasing factor: comparison of the restrained molecular dynamics and distance geometry methods for a system without long-range distance data.人生长激素释放因子的溶液构象：无长程距离数据系统的受限分子动力学和距离几何方法比较
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5
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Biopolymers. 1990 Oct-Nov;29(12-13):1565-85. doi: 10.1002/bip.360291207.