• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用随机网络模型分析热滞蛋白水合作用

Analysis of thermal hysteresis protein hydration using the random network model.

作者信息

Gallagher Kelly Ryan, Sharp Kim A

机构信息

Department of Biochemistry and Biophysics, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA 19104-6059, USA.

出版信息

Biophys Chem. 2003 Sep;105(2-3):195-209. doi: 10.1016/s0301-4622(03)00087-5.

DOI:10.1016/s0301-4622(03)00087-5
PMID:14499892
Abstract

The hydration of polar and apolar groups can be explained quantitatively, via the random network model of water, in terms of differential distortions in first hydration shell water-water hydrogen bonding angle. This method of analyzing solute induced structural distortions of water is applied to study the ice-binding type III thermal hysteresis protein. The analysis reveals subtle but significant differences in solvent structuring of the ice-binding surface, compared to non-ice binding protein surface. The major differences in hydration in the ice-binding region are (i). polar groups have a very apolar-like hydration. (ii). there is more uniform hydration structure. Overall, this surface strongly enhances the tetrahedral, or ice-like, hydration within the primary hydration shell. It is concluded that these two specific features of the hydration structure are important for this surface to recognize, and preferentially interact with nascent ice crystals forming in liquid water.

摘要

通过水的随机网络模型,根据第一水化层中水分子间氢键角度的差异畸变,可以定量解释极性和非极性基团的水化作用。这种分析溶质引起的水结构畸变的方法被应用于研究III型冰结合热滞蛋白。分析结果表明,与非冰结合蛋白表面相比,冰结合表面的溶剂结构存在细微但显著的差异。冰结合区域水化作用的主要差异在于:(i)极性基团具有非常类似非极性基团的水化作用。(ii)水化结构更加均匀。总体而言,该表面强烈增强了第一水化层内的四面体或类冰状水化作用。得出的结论是,水化结构的这两个特定特征对于该表面识别并优先与液态水中形成的新生冰晶相互作用很重要。

相似文献

1
Analysis of thermal hysteresis protein hydration using the random network model.使用随机网络模型分析热滞蛋白水合作用
Biophys Chem. 2003 Sep;105(2-3):195-209. doi: 10.1016/s0301-4622(03)00087-5.
2
The mechanism of the type III antifreeze protein action: a computational study.III型抗冻蛋白的作用机制:一项计算研究。
Biophys Chem. 2004 Apr 1;109(1):137-48. doi: 10.1016/j.bpc.2003.10.024.
3
Hydrophobic tendency of polar group hydration as a major force in type I antifreeze protein recognition.极性基团水合的疏水倾向作为I型抗冻蛋白识别的主要力量。
Proteins. 2005 May 1;59(2):266-74. doi: 10.1002/prot.20429.
4
Effect of glycosylation on hydration behavior at the ice-binding surface of the Ocean Pout type III antifreeze protein: a molecular dynamics simulation.糖基化对海洋鲈 III 型抗冻蛋白冰结合表面水合行为的影响:分子动力学模拟。
J Biomol Struct Dyn. 2017 Dec;35(16):3591-3604. doi: 10.1080/07391102.2016.1264888. Epub 2016 Dec 26.
5
Unusual structural properties of water within the hydration shell of hyperactive antifreeze protein.高活性抗冻蛋白水化层内水的异常结构特性
J Chem Phys. 2014 Aug 7;141(5):055103. doi: 10.1063/1.4891810.
6
Comparative study of hydration shell dynamics around a hyperactive antifreeze protein and around ubiquitin.高活性抗冻蛋白和泛素周围水化层动力学的比较研究
J Chem Phys. 2014 Dec 14;141(22):22D529. doi: 10.1063/1.4902822.
7
Ordered hydration layer mediated ice adsorption of a globular antifreeze protein: mechanistic insight.有序水化层介导的球状抗冻蛋白对冰的吸附:作用机制的见解。
Phys Chem Chem Phys. 2019 Sep 21;21(35):19298-19310. doi: 10.1039/c9cp03135a. Epub 2019 Aug 27.
8
Dual function of the hydration layer around an antifreeze protein revealed by atomistic molecular dynamics simulations.原子分子动力学模拟揭示抗冻蛋白周围水化层的双重功能
J Am Chem Soc. 2008 Oct 1;130(39):13066-73. doi: 10.1021/ja8034027. Epub 2008 Sep 6.
9
Role of Polar and Nonpolar Groups in the Activity of Antifreeze Proteins: A Molecular Dynamics Simulation Study.极性和非极性基团在抗冻蛋白活性中的作用:分子动力学模拟研究。
J Phys Chem B. 2018 Oct 11;122(40):9389-9398. doi: 10.1021/acs.jpcb.8b08506. Epub 2018 Sep 27.
10
The remarkable hydration of the antifreeze protein Maxi: a computational study.抗冻蛋白Maxi的显著水合作用:一项计算研究
J Chem Phys. 2014 Dec 14;141(22):22D510. doi: 10.1063/1.4896693.

引用本文的文献

1
Structural diversity of marine anti-freezing proteins, properties and potential applications: a review.海洋抗冻蛋白的结构多样性、特性及潜在应用:综述
Bioresour Bioprocess. 2022 Jan 22;9(1):5. doi: 10.1186/s40643-022-00494-7.
2
An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.一种来自南极子囊菌的冰结合蛋白被精细地调整为与位于冰棱柱面的特定水分子结合。
Biomolecules. 2020 May 13;10(5):759. doi: 10.3390/biom10050759.
3
Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
钙结合在 II 型抗冻蛋白上生成半笼形水合物以吸附到冰晶表面。
Biomolecules. 2019 Apr 27;9(5):162. doi: 10.3390/biom9050162.
4
Unbiased Atomistic Insight into the Mechanisms and Solvent Role for Globular Protein Dimer Dissociation.无偏原子视角下的球状蛋白二聚体解离机制及溶剂作用
J Phys Chem B. 2019 Mar 7;123(9):1883-1895. doi: 10.1021/acs.jpcb.8b10005. Epub 2019 Feb 27.
5
Antifreeze protein hydration waters: Unstructured unless bound to ice.抗冻蛋白的水化水:未结合冰时呈无结构状态。
Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):8244-8246. doi: 10.1073/pnas.1810812115. Epub 2018 Aug 6.
6
Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein.多面冰状水网络仅在冰结合蛋白的活性增强变体中出现。
Proc Natl Acad Sci U S A. 2018 May 22;115(21):5456-5461. doi: 10.1073/pnas.1800635115. Epub 2018 May 7.
7
Concentration-dependent oligomerization of an alpha-helical antifreeze polypeptide makes it hyperactive.浓度依赖性的α-螺旋型抗冻多肽寡聚化使其高活性化。
Sci Rep. 2017 Feb 13;7:42501. doi: 10.1038/srep42501.
8
Investigation of changes in structure and thermodynamic of spruce budworm antifreeze protein under subfreezing temperature.研究亚低温下云杉卷叶蛾抗冻蛋白结构和热力学性质的变化。
Sci Rep. 2017 Jan 20;7:40032. doi: 10.1038/srep40032.
9
Observation of ice-like water layers at an aqueous protein surface.对蛋白质水溶液表面类冰层的观察。
Proc Natl Acad Sci U S A. 2014 Dec 16;111(50):17732-6. doi: 10.1073/pnas.1414188111. Epub 2014 Dec 2.
10
Re-evaluation of a bacterial antifreeze protein as an adhesin with ice-binding activity.重新评估一种具有冰结合活性的细菌抗冻蛋白作为黏附素。
PLoS One. 2012;7(11):e48805. doi: 10.1371/journal.pone.0048805. Epub 2012 Nov 7.