Giese Bernd, McNaughton Don
School of Chemistry and Centre for Biospectroscopy, Monash University, Wellington Road, Clayton, Victoria 3800, Australia.
Biopolymers. 2003;72(6):472-89. doi: 10.1002/bip.10480.
Surface-enhanced Raman spectroscopy (SERS) in a silver sol assisted by density functional theory (DFT) calculations is shown to be a promising tool in the characterization of platinum complexes and their interaction with nucleic acid bases. This is demonstrated using cisplatin and guanine as a model. The energies and geometric parameters of cisplatin, guanine, and their reaction products are calculated at Becke's nonlocal three parameter exchange and correlation functional and the Lee-Yang-Parr correlation functional level using the 6-31++G(d,p) basis set on the light elements and the effective core potential by Hay and Wadt on platinum. Available X-ray crystallography data are mostly in agreement with predictions within the experimental precision level, although Pt-N bond lengths tend to be systematically overestimated. The normal Raman spectrum of cisplatin is assigned. The SERS spectra of cisplatin and its reaction product with guanine are measured from 10(-6) M aqueous solution. The observed spectral changes in the SERS spectrum of guanine upon cisplatin binding are modeled by DFT calculations. The best agreement between theory and experiment is achieved when the adsorbed reaction product is assumed to be the 1:1 adduct cis-Pt(NH3)2ClG in which Pt is bound to N7 and guanine is deprotonated at N9.
在密度泛函理论(DFT)计算辅助下的银溶胶中的表面增强拉曼光谱(SERS),被证明是表征铂配合物及其与核酸碱基相互作用的一种很有前景的工具。以顺铂和鸟嘌呤作为模型对此进行了证明。在Becke的非局部三参数交换和相关泛函以及Lee-Yang-Parr相关泛函水平上,使用6-31++G(d,p)基组处理轻元素,并使用Hay和Wadt针对铂的有效核势,计算了顺铂、鸟嘌呤及其反应产物的能量和几何参数。尽管铂氮键长度往往会被系统性高估,但现有的X射线晶体学数据大多在实验精度水平内与预测结果一致。确定了顺铂的常规拉曼光谱。从10(-6) M水溶液中测量了顺铂及其与鸟嘌呤反应产物的SERS光谱。通过DFT计算对顺铂结合后鸟嘌呤SERS光谱中观察到的光谱变化进行了模拟。当假定吸附的反应产物为1:1加合物顺式-Pt(NH3)2ClG(其中Pt与N7结合且鸟嘌呤在N9处去质子化)时,理论与实验之间取得了最佳一致性。