Boomershine William P, McElroy Craig A, Tsai Hsin-Yue, Wilson Ross C, Gopalan Venkat, Foster Mark P
Biochemistry Program, Ohio State University, Columbus, OH 43210, USA.
Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15398-403. doi: 10.1073/pnas.2535887100. Epub 2003 Dec 12.
We have determined the solution structure of Mth11 (Mth Rpp29), an essential subunit of the RNase P enzyme from the archaebacterium Methanothermobacter thermoautotrophicus (Mth). RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA ( approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor ( approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits, we found that Mth Rpp29, a homolog of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme. Consistent with its role in mediating protein-RNA interactions, we report that Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. In addition to a structured beta-barrel core, it possesses unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues. To identify possible RNA contacts in the protein-RNA complex, we examined the interaction of the 11-kDa protein with the full 100-kDa Mth RNA subunit by using NMR chemical shift perturbation. Our findings represent a critical step toward a structural model of the RNase P holoenzyme from archaebacteria and higher organisms.
我们已经确定了嗜热自养甲烷嗜热菌(Mth)核糖核酸酶P(RNase P)的一个必需亚基Mth11(Mth Rpp29)的溶液结构。RNase P是一种普遍存在的核糖核蛋白酶,主要负责在生命的所有三个域中tRNA成熟过程中切割5'前导序列。在真细菌中,这种酶由两个亚基组成:一个负责介导催化作用的大RNA(约120 kDa)和一个调节底物识别且在体内有效催化所必需的小蛋白质辅因子(约15 kDa)。相比之下,真核生物和古细菌的RNase P与多种蛋白质相关,并且这些蛋白质与保守的细菌蛋白质亚基没有可识别的同源性。在用重组表达和纯化的蛋白质亚基进行的重组实验中,我们发现Mth Rpp29,即真核生物RNase P的Rpp29蛋白质亚基的同源物,是古细菌全酶的必需蛋白质成分。与其在介导蛋白质-RNA相互作用中的作用一致,我们报道Mth Rpp29是寡核苷酸/寡糖结合折叠家族的成员。除了一个结构化的β-桶状核心外,它还具有带有几个高度保守氨基酸残基的非结构化N端和C端延伸。为了确定蛋白质-RNA复合物中可能的RNA接触点,我们使用NMR化学位移扰动研究了11 kDa蛋白质与完整的100 kDa Mth RNA亚基之间的相互作用。我们的发现代表了朝着古细菌和高等生物的RNase P全酶结构模型迈出的关键一步。