Kimura Tomohiro, Matubayasi Nobuyuki, Nakahara Masaru
Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan.
Biophys J. 2004 Feb;86(2):1124-37. doi: 10.1016/S0006-3495(04)74187-9.
Sequence-position dependence of the side-chain conformational equilibrium of aspartic acid (Asp) residue is investigated for both model Asp peptides (di- to tetra-) and neuropeptide achatin-I (Gly--Phe-Ala-Asp) in aqueous solution. The trans-to-gauche conformational changes on the dihedral angle of C-C(alpha)-C(beta)-C are analyzed in terms of the standard free energy DeltaG(0), enthalpy DeltaH(0), and entropy -TDeltaS(0). The thermodynamic quantities are obtained by measuring the dihedral-angle-dependent vicinal (1)H-(1)H coupling constants in nuclear magnetic resonance over a wide temperature range. When the carboxyl groups of Asp are ionized, DeltaG(0) in the aqueous phase depends by approximately 1-2 kJ mol(-1) on the sequence position, whereas the energy change in the gas phase (absence of solvent) depends by tens of kJ mol(-1). Therefore, the weak position dependence of DeltaG(0) is a result of the compensation for the intramolecular effect by the hydration (= DeltaG(0)-). The DeltaH(0) and -TDeltaS(0) components, on the other hand, exhibit a notable trend at the C-terminus. The C-terminal DeltaH(0) is larger than the N- and nonterminal DeltaH(0) values due to the intramolecular repulsion between alpha- and beta-. The C-terminal -TDeltaS(0) is negative and larger in magnitude than the others, and an attractive solute-solvent interaction at the C-terminus serves as a structure breaker of the water solvent.
研究了水溶液中模型天冬氨酸(Asp)肽(二肽至四肽)和神经肽玛瑙螺抑素-I(甘氨酸-苯丙氨酸-丙氨酸-天冬氨酸)中天冬氨酸(Asp)残基侧链构象平衡的序列位置依赖性。根据标准自由能ΔG(0)、焓ΔH(0)和熵-TDeltaS(0),分析了C-C(α)-C(β)-C二面角上的反式到gauche构象变化。通过在很宽的温度范围内测量核磁共振中依赖于二面角的邻位(1)H-(1)H耦合常数来获得热力学量。当天冬氨酸的羧基离子化时,水相中的ΔG(0)在序列位置上大约依赖1-2 kJ/mol,而气相(无溶剂)中的能量变化依赖几十kJ/mol。因此,ΔG(0)的弱位置依赖性是水合作用(=ΔG(0)-)对分子内效应进行补偿的结果。另一方面,ΔH(0)和-TDeltaS(0)组分在C末端呈现出显著趋势。由于α-和β-之间的分子内排斥作用,C末端的ΔH(0)大于N末端和非末端的ΔH(0)值。C末端的-TDeltaS(0)为负且绝对值大于其他值,C末端的溶质-溶剂吸引相互作用起到了水溶剂结构破坏剂的作用。