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花生凝集素的结构可塑性:一项涉及pH值变化、配体结合和晶体结构的X射线分析。

Structural plasticity of peanut lectin: an X-ray analysis involving variation in pH, ligand binding and crystal structure.

作者信息

Kundhavai Natchiar S, Arockia Jeyaprakash A, Ramya T N C, Thomas C J, Suguna K, Surolia A, Vijayan M

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.

出版信息

Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):211-9. doi: 10.1107/S090744490302849X. Epub 2004 Jan 23.

DOI:10.1107/S090744490302849X
PMID:14747696
Abstract

Until recently, it has only been possible to grow crystals of peanut lectin when complexed with sugar ligands. It is now shown that it is possible to grow peanut lectin crystals at acidic pH in the presence of oligopeptides corresponding to a loop in the lectin molecule. Crystals have also been prepared in the presence of these peptides as well as lactose. Low-pH crystal forms of the lectin-lactose complex similar to those obtained at neutral pH have also been grown. Thus, crystals of peanut lectin grown under different environmental conditions, at two pH values with and without sugar bound to the lectin, are now available. They have been used to explore the plasticity and hydration of the molecule. A detailed comparison between different structures shows that the lectin molecule is sturdy and that the effect of changes in pH, ligand binding and environment on it is small. The region involving the curved front beta-sheet and the loops around the second hydrophobic core is comparatively rigid. The back beta-sheet involved in quaternary association, which exhibits considerable variability, is substantially flexible, as is the sugar-binding region. The numbers of invariant water molecules in the hydration shell are small and they are mainly involved in metal coordination or in stabilizing unusual structural features. Small consistent movements occur in the combining site upon sugar binding, although the site is essentially preformed.

摘要

直到最近,只有在与糖配体复合时才能生长出花生凝集素晶体。现在表明,在酸性pH条件下,在存在与凝集素分子中一个环相对应的寡肽的情况下,可以生长出花生凝集素晶体。在这些肽以及乳糖存在的情况下也制备出了晶体。还生长出了与在中性pH下获得的类似的凝集素-乳糖复合物的低pH晶体形式。因此,现在可以获得在不同环境条件下、在两个pH值下、有或没有糖与凝集素结合时生长的花生凝集素晶体。它们已被用于探索该分子的可塑性和水合作用。不同结构之间的详细比较表明,凝集素分子很坚固,pH变化、配体结合和环境对其的影响很小。涉及弯曲的前β-折叠和第二个疏水核心周围环的区域相对刚性。参与四级缔合的后β-折叠表现出相当大的变异性,非常灵活,糖结合区域也是如此。水合壳中不变水分子的数量很少,它们主要参与金属配位或稳定异常的结构特征。尽管结合位点基本上是预先形成的,但在糖结合时结合位点会发生小的一致移动。

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