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[静电相互作用对DNA中糖-磷酸骨架构象的影响]

[The effect of electrostatic interactions on the conformation of the sugar-phosphate backbone in DNA].

作者信息

Pechenaia V I

出版信息

Mol Biol (Mosk). 1992 Nov-Dec;26(6):1416-25.

PMID:1491682
Abstract

The influence of sugar ring flexibility in DNA on the mechanism of the B<-->A conformational transition is studied. The dipole moment of the deoxyribose as a function of its puckered states is calculated by the quantum-mechanical method using the MINDO/3 approximation. The interaction of the sugar dipole with the neighbour molecular groups in polynucleotide chain is estimated. The sugar dipole interaction witch phosphate groups and counterions is shown to be strong and capable to deform the pseudorotation potential of deoxyribose. The effective pseudorotation potential of sugar ring in the B- and A-helices is obtained. The results are used to explain the behaviour of Raman bands in the region of sugar-phosphate vibrations. The mechanism of the effect of electrostatic forces on the sugar-phosphate backbone conformation which is essential for the B<-->A and other structure transitions is offered.

摘要

研究了DNA中糖环柔韧性对B<-->A构象转变机制的影响。采用MINDO/3近似的量子力学方法计算了脱氧核糖偶极矩与其褶皱状态的函数关系。估算了糖偶极与多核苷酸链中相邻分子基团的相互作用。结果表明,糖偶极与磷酸基团和抗衡离子的相互作用很强,能够使脱氧核糖的假旋转势发生变形。得到了B-螺旋和A-螺旋中糖环的有效假旋转势。利用这些结果解释了糖-磷酸振动区域拉曼带的行为。提出了静电力对糖-磷酸主链构象的影响机制,这对B<-->A及其他结构转变至关重要。

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