• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于基因表达数据的肿瘤分类的惩罚判别方法。

Penalized discriminant methods for the classification of tumors from gene expression data.

作者信息

Ghosh Debashis

机构信息

Department of Biostatistics, University of Michigan, 1420 Washington Heights, Ann Arbor, Michigan 48105, USA.

出版信息

Biometrics. 2003 Dec;59(4):992-1000. doi: 10.1111/j.0006-341x.2003.00114.x.

DOI:10.1111/j.0006-341x.2003.00114.x
PMID:14969478
Abstract

Due to the advent of high-throughput microarray technology, it has become possible to develop molecular classification systems for various types of cancer. In this article, we propose a methodology using regularized regression models for the classification of tumors in microarray experiments. The performances of principal components, partial least squares, and ridge regression models are studied; these regression procedures are adapted to the classification setting using the optimal scoring algorithm. We also develop a procedure for ranking genes based on the fitted regression models. The proposed methodologies are applied to two microarray studies in cancer.

摘要

由于高通量微阵列技术的出现,开发针对各种癌症类型的分子分类系统已成为可能。在本文中,我们提出了一种使用正则化回归模型在微阵列实验中对肿瘤进行分类的方法。研究了主成分、偏最小二乘法和岭回归模型的性能;这些回归程序通过最优评分算法适用于分类设置。我们还开发了一种基于拟合回归模型对基因进行排名的程序。所提出的方法应用于两项癌症微阵列研究。

相似文献

1
Penalized discriminant methods for the classification of tumors from gene expression data.基于基因表达数据的肿瘤分类的惩罚判别方法。
Biometrics. 2003 Dec;59(4):992-1000. doi: 10.1111/j.0006-341x.2003.00114.x.
2
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.使用微阵列基因表达数据通过判别偏最小二乘法进行多类别肿瘤分类及分类模型评估
Comput Biol Chem. 2004 Jul;28(3):235-44. doi: 10.1016/j.compbiolchem.2004.05.002.
3
Regularized Least Squares Cancer classifiers from DNA microarray data.基于DNA微阵列数据的正则化最小二乘癌症分类器。
BMC Bioinformatics. 2005 Dec 1;6 Suppl 4(Suppl 4):S2. doi: 10.1186/1471-2105-6-S4-S2.
4
Multi-class cancer classification via partial least squares with gene expression profiles.基于基因表达谱的偏最小二乘法进行多类别癌症分类
Bioinformatics. 2002 Sep;18(9):1216-26. doi: 10.1093/bioinformatics/18.9.1216.
5
Independent component analysis-based penalized discriminant method for tumor classification using gene expression data.基于独立成分分析的惩罚判别方法用于利用基因表达数据进行肿瘤分类
Bioinformatics. 2006 Aug 1;22(15):1855-62. doi: 10.1093/bioinformatics/btl190. Epub 2006 May 18.
6
Tumor classification by partial least squares using microarray gene expression data.利用微阵列基因表达数据通过偏最小二乘法进行肿瘤分类。
Bioinformatics. 2002 Jan;18(1):39-50. doi: 10.1093/bioinformatics/18.1.39.
7
Linear regression and two-class classification with gene expression data.基于基因表达数据的线性回归和二分类
Bioinformatics. 2003 Nov 1;19(16):2072-8. doi: 10.1093/bioinformatics/btg283.
8
Singular value decomposition regression models for classification of tumors from microarray experiments.用于从微阵列实验中对肿瘤进行分类的奇异值分解回归模型。
Pac Symp Biocomput. 2002:18-29.
9
Classification from microarray data using probabilistic discriminant partial least squares with reject option.基于概率判别偏最小二乘法和剔除选项的微阵列数据分析分类。
Talanta. 2009 Nov 15;80(1):321-8. doi: 10.1016/j.talanta.2009.06.072. Epub 2009 Jul 7.
10
Classification of multiple cancer types by multicategory support vector machines using gene expression data.使用基因表达数据通过多类别支持向量机对多种癌症类型进行分类。
Bioinformatics. 2003 Jun 12;19(9):1132-9. doi: 10.1093/bioinformatics/btg102.

引用本文的文献

1
Discovering combinatorial interactions in survival data.发现生存数据中的组合相互作用。
Bioinformatics. 2013 Dec 1;29(23):3053-9. doi: 10.1093/bioinformatics/btt532. Epub 2013 Sep 13.
2
Classifier assessment and feature selection for recognizing short coding sequences of human genes.用于识别人类基因短编码序列的分类器评估与特征选择
J Comput Biol. 2012 Mar;19(3):251-60. doi: 10.1089/cmb.2011.0078.
3
Molecular classification of gastric cancer: a new paradigm.胃癌的分子分类:一种新的范例。
Clin Cancer Res. 2011 May 1;17(9):2693-701. doi: 10.1158/1078-0432.CCR-10-2203. Epub 2011 Mar 23.
4
Bias-corrected diagonal discriminant rules for high-dimensional classification.用于高维分类的偏差校正对角判别规则。
Biometrics. 2010 Dec;66(4):1096-106. doi: 10.1111/j.1541-0420.2010.01395.x.
5
Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data.基于收缩的对角判别分析及其在高维数据中的应用。
Biometrics. 2009 Dec;65(4):1021-9. doi: 10.1111/j.1541-0420.2009.01200.x.
6
Evaluating microarray-based classifiers: an overview.评估基于微阵列的分类器:综述。
Cancer Inform. 2008;6:77-97. doi: 10.4137/cin.s408. Epub 2008 Feb 29.
7
Oncoantigens as anti-tumor vaccination targets: the chance of a lucky strike?肿瘤抗原作为抗肿瘤疫苗的靶点:侥幸成功的机会?
Cancer Immunol Immunother. 2008 Nov;57(11):1685-94. doi: 10.1007/s00262-008-0481-x. Epub 2008 Feb 20.
8
A comparative study of discriminating human heart failure etiology using gene expression profiles.利用基因表达谱鉴别人类心力衰竭病因的比较研究。
BMC Bioinformatics. 2005 Aug 24;6:205. doi: 10.1186/1471-2105-6-205.
9
Differential and trajectory methods for time course gene expression data.时间进程基因表达数据的差异分析和轨迹分析方法
Bioinformatics. 2005 Jul 1;21(13):3009-16. doi: 10.1093/bioinformatics/bti465. Epub 2005 May 10.