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对绵羊皮肤cDNA文库进行微卫星序列的系统筛选。

Systematic screening of sheep skin cDNA libraries for microsatellite sequences.

作者信息

DeSilva U, Franklin I R, Maddox J F, van Hest B, Adelson D L

机构信息

CSIRO Livestock Industries, Indooroopilly, QLD, Australia.

出版信息

Cytogenet Genome Res. 2003;102(1-4):79-84. doi: 10.1159/000075729.

DOI:10.1159/000075729
PMID:14970683
Abstract

65,000 sheep skin cDNA clones were gridded in high density on to nylon membranes and screened for (CA)n and (GA)n repeat containing clones. 296 dinucleotide repeat-containing clones were identified with approximately 85% non-redundancy. Clones were single-pass 5' sequenced and we compared the Expressed Sequence Tag (EST) sequences to the Swiss-Prot database to ascertain their identity and/or putative function. We then aligned the ESTs against the human genomic sequence to determine the locations of human orthologous sequences. Finally, we developed a subset of polymorphic microsatellite markers and positioned them on the ovine linkage map.

摘要

将65000个绵羊皮肤cDNA克隆高密度点阵到尼龙膜上,筛选含有(CA)n和(GA)n重复序列的克隆。鉴定出296个含二核苷酸重复序列的克隆,其冗余度约为85%。对克隆进行单通道5'端测序,并将表达序列标签(EST)序列与瑞士蛋白质数据库进行比较,以确定其身份和/或推定功能。然后将EST与人类基因组序列进行比对,以确定人类直系同源序列的位置。最后,开发了一组多态性微卫星标记,并将其定位到绵羊连锁图谱上。

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