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本文引用的文献

1
Structure and mechanism of the lactose permease of Escherichia coli.大肠杆菌乳糖通透酶的结构与机制
Science. 2003 Aug 1;301(5633):610-5. doi: 10.1126/science.1088196.
2
Secondary and tertiary structure formation of the beta-barrel membrane protein OmpA is synchronized and depends on membrane thickness.β-桶状膜蛋白OmpA的二级和三级结构形成是同步的,并且取决于膜的厚度。
J Mol Biol. 2002 Nov 22;324(2):319-30. doi: 10.1016/s0022-2836(02)01071-9.
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Topology and secondary structure of the N-terminal domain of diacylglycerol kinase.二酰基甘油激酶N端结构域的拓扑结构和二级结构
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Open channel structure of MscL and the gating mechanism of mechanosensitive channels.MscL的开放通道结构与机械敏感通道的门控机制。
Nature. 2002 Aug 29;418(6901):942-8. doi: 10.1038/nature00992.
5
Structural transitions in short-chain lipid assemblies studied by (31)P-NMR spectroscopy.通过³¹P核磁共振光谱研究短链脂质聚集体中的结构转变。
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The effects of acyl chain length and saturation of diacylglycerols and phosphatidylcholines on membrane monolayer curvature.二酰基甘油和磷脂酰胆碱的酰基链长度及饱和度对膜单层曲率的影响。
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Effect of urea, dimethylurea, and tetramethylurea on the phase behavior of dioleoylphosphatidylethanolamine.尿素、二甲基脲和四甲基脲对二油酰磷脂酰乙醇胺相行为的影响。
Chem Phys Lipids. 2002 Feb;114(2):149-57. doi: 10.1016/s0009-3084(01)00198-0.
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Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures.迈向β-桶膜蛋白的基因组鉴定:已知结构的组成与架构
Protein Sci. 2002 Feb;11(2):301-12. doi: 10.1110/ps.29402.
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Energetics, stability, and prediction of transmembrane helices.跨膜螺旋的能量学、稳定性及预测
J Mol Biol. 2001 Oct 5;312(5):927-34. doi: 10.1006/jmbi.2001.5008.
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How membranes shape protein structure.膜如何塑造蛋白质结构。
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整合膜蛋白稳定性与脂质双分子层力的弹性耦合。

Elastic coupling of integral membrane protein stability to lipid bilayer forces.

作者信息

Hong Heedeok, Tamm Lukas K

机构信息

Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA 22908, USA.

出版信息

Proc Natl Acad Sci U S A. 2004 Mar 23;101(12):4065-70. doi: 10.1073/pnas.0400358101. Epub 2004 Feb 27.

DOI:10.1073/pnas.0400358101
PMID:14990786
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC384696/
Abstract

It has been traditionally difficult to measure the thermodynamic stability of membrane proteins because fully reversible protocols for complete folding these proteins were not available. Knowledge of the thermodynamic stability of membrane proteins is desirable not only from a fundamental theoretical standpoint, but is also of enormous practical interest for the rational design of membrane proteins and for optimizing conditions for their structure determination by crystallography or NMR. Here, we describe the design of a fully reversible system to study equilibrium folding of the outer membrane protein A from Escherichia coli in lipid bilayers. Folding is shown to be two-state under appropriate conditions permitting data analysis with a classical folding model developed for soluble proteins. The resulting free energy and m value, i.e., a measure of cooperativity, of unfolding are DeltaG(u,H2O)(o)=3.4 kcal/mol and m = 1.1 kcal/mol M(-1), respectively, in a reference bilayer composed of palmitoyl-oleoyl-phosphatidylcholine (C(16:0)C(18:1)PC) and palmitoyloleoyl-phosphatidylglycerol (C(16:0)C(18:1)PG). These values are strong functions of the lipid bilayer environment. By systematic variation of lipid headgroup and chain composition, we show that elastic bilayer forces such as curvature stress and hydrophobic mismatch modulate the free energy and cooperativity of folding of this and perhaps many other membrane proteins.

摘要

传统上,测量膜蛋白的热力学稳定性一直很困难,因为没有完全可逆的方案来使这些蛋白完全折叠。了解膜蛋白的热力学稳定性不仅从基础理论角度来看是必要的,而且对于膜蛋白的合理设计以及优化通过晶体学或核磁共振确定其结构的条件也具有极大的实际意义。在此,我们描述了一种完全可逆的系统设计,用于研究大肠杆菌外膜蛋白A在脂质双层中的平衡折叠。在适当条件下,折叠显示为两态,这使得可以用为可溶性蛋白开发的经典折叠模型进行数据分析。在由棕榈酰油酰磷脂酰胆碱(C(16:0)C(18:1)PC)和棕榈酰油酰磷脂酰甘油(C(16:0)C(18:1)PG)组成的参考双层中,展开的自由能和m值(即协同性的一种度量)分别为ΔG(u,H2O)(o)=3.4千卡/摩尔和m = 1.1千卡/摩尔·M(-1)。这些值是脂质双层环境的强函数。通过系统改变脂质头基和链的组成,我们表明诸如曲率应力和疏水不匹配等弹性双层力会调节该膜蛋白以及可能许多其他膜蛋白折叠的自由能和协同性。