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动力相关蛋白 1 的可变结构域促进液-液相分离,从而增强其与含有心磷脂的膜的相互作用。

The variable domain from dynamin-related protein 1 promotes liquid-liquid phase separation that enhances its interaction with cardiolipin-containing membranes.

机构信息

Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, USA.

Department of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.

出版信息

Protein Sci. 2023 Nov;32(11):e4787. doi: 10.1002/pro.4787.

DOI:10.1002/pro.4787
PMID:37743569
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10578129/
Abstract

Dynamins are an essential superfamily of mechanoenzymes that remodel membranes and often contain a "variable domain" important for regulation. For the mitochondrial fission dynamin, dynamin-related protein 1, a regulatory role for the variable domain (VD) is demonstrated by gain- and loss-of-function mutations, yet the basis for this is unclear. Here, the isolated VD is shown to be intrinsically disordered and undergo a cooperative transition in the stabilizing osmolyte trimethylamine N-oxide. However, the osmolyte-induced state is not folded and surprisingly appears as a condensed state. Other co-solutes including known molecular crowder Ficoll PM 70, also induce a condensed state. Fluorescence recovery after photobleaching experiments reveal this state to be liquid-like indicating the VD undergoes a liquid-liquid phase separation under crowding conditions. These crowding conditions also enhance binding to cardiolipin, a mitochondrial lipid, which appears to promote phase separation. Since dynamin-related protein 1 is found assembled into discrete punctate structures on the mitochondrial surface, the inference from the present work is that these structures might arise from a condensed state involving the VD that may enable rapid tuning of mechanoenzyme assembly necessary for fission.

摘要

动力蛋白是一类重要的机械酶超家族,可重塑膜,通常包含一个对调节很重要的“可变域”。对于线粒体裂变动力蛋白,即相关蛋白 1,其可变域(VD)的调节作用通过功能获得和丧失突变得到证实,但这一作用的基础尚不清楚。本研究表明,分离的 VD 呈固有无序状态,并在稳定渗透压剂三甲基氧化胺中发生协同转变。然而,渗透压诱导的状态并未折叠,出人意料的是呈现出一种凝聚状态。其他共溶剂,包括已知的分子拥挤剂 Ficoll PM 70,也会诱导凝聚状态。荧光恢复后光漂白实验表明,这种状态为液态,表明 VD 在拥挤条件下发生液-液相分离。这些拥挤条件还增强了与心磷脂的结合,心磷脂是一种线粒体脂质,似乎促进了相分离。由于相关蛋白 1 被发现组装成离散的点状结构存在于线粒体表面,因此本研究推断这些结构可能来自涉及 VD 的凝聚状态,这可能使分裂所需的机械酶组装能够快速调整。

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J Phys Chem B. 2023 Jan 19;127(2):438-445. doi: 10.1021/acs.jpcb.2c05434. Epub 2023 Jan 5.
3
Intrinsically disordered regions that drive phase separation form a robustly distinct protein class.内在无序区域驱动相分离形成了一个截然不同的蛋白质类别。
J Biol Chem. 2023 Jan;299(1):102801. doi: 10.1016/j.jbc.2022.102801. Epub 2022 Dec 14.
4
NMR identification of a conserved Drp1 cardiolipin-binding motif essential for stress-induced mitochondrial fission.NMR 鉴定应激诱导的线粒体分裂所必需的保守的 Drp1 心磷脂结合基序。
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5
High-fidelity reconstitution of stress granules and nucleoli in mammalian cellular lysate.哺乳动物细胞裂解物中应激颗粒和核仁的高保真重建。
J Cell Biol. 2021 Mar 1;220(3). doi: 10.1083/jcb.202009079.
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Liquid-Liquid Phase Separation in Crowded Environments.拥挤环境中的液-液相分离。
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