Lins Roberto D, Pereira Cristina S, Hünenberger Philippe H
Laboratory of Physical Chemistry, ETH-Hönggerberg, Zürich, Switzerland.
Proteins. 2004 Apr 1;55(1):177-86. doi: 10.1002/prot.10632.
A variety of sugars are known to enhance the stability of biomaterials. Trehalose, a nonreducing disaccharide composed of two alpha, alpha(1 --> 1)-linked D-glucopyranose units, appears to be one of the most effective protectants. Both in vivo and in vitro, trehalose protects biostructures such as proteins and membranes from damage due to dehydration, heat, or cold. However, despite the significant amount of experimental data on this disaccharide, no clear picture of the molecular mechanism responsible for its stabilizing properties has emerged yet. Three major hypotheses (water-trehalose hydrogen-bond replacement, coating by a trapped water layer, and mechanical inhibition of the conformational fluctuations) have been proposed to explain the stabilizing effect of trehalose on proteins. To investigate the nature of protein-trehalose-water interactions in solution at the molecular level, two molecular dynamics simulations of the protein lysozyme in solution at room temperature have been carried out, one in the presence (about 0.5 M) and one in the absence of trehalose. The results show that the trehalose molecules cluster and move toward the protein, but neither completely expel water from the protein surface nor form hydrogen bonds with the protein. Furthermore, the coating by trehalose does not significantly reduce the conformational fluctuations of the protein compared to the trehalose-free system. Based on these observations, a model is proposed for the interaction of trehalose molecules with a protein in moderately concentrated solutions, at room temperature and on the nanosecond timescale.
已知多种糖类可增强生物材料的稳定性。海藻糖是一种由两个α,α(1→1)连接的D-吡喃葡萄糖单元组成的非还原性二糖,似乎是最有效的保护剂之一。在体内和体外,海藻糖都能保护蛋白质和膜等生物结构免受脱水、热或冷造成的损伤。然而,尽管有大量关于这种二糖的实验数据,但尚未出现关于其稳定特性的分子机制的清晰图景。为了解释海藻糖对蛋白质的稳定作用,人们提出了三个主要假说(水-海藻糖氢键替代、被捕获的水层覆盖以及对构象波动的机械抑制)。为了在分子水平上研究溶液中蛋白质-海藻糖-水相互作用的本质,我们进行了两个室温下溶液中溶菌酶的分子动力学模拟,一个模拟中有海藻糖(约0.5M),另一个模拟中没有海藻糖。结果表明,海藻糖分子聚集并向蛋白质移动,但既没有完全将水从蛋白质表面排出,也没有与蛋白质形成氢键。此外,与无海藻糖体系相比,海藻糖的覆盖并没有显著降低蛋白质的构象波动。基于这些观察结果,我们提出了一个在室温下和纳秒时间尺度上,海藻糖分子与中等浓度溶液中蛋白质相互作用的模型。