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海藻糖、麦芽糖和蔗糖如何影响溶菌酶的一些结构和动力学特性?来自分子动力学模拟的见解。

How do trehalose, maltose, and sucrose influence some structural and dynamical properties of lysozyme? Insight from molecular dynamics simulations.

作者信息

Lerbret A, Bordat P, Affouard F, Hédoux A, Guinet Y, Descamps M

机构信息

Department of Food Science, Cornell University, Stocking Hall, Ithaca, New York 14853, USA.

出版信息

J Phys Chem B. 2007 Aug 9;111(31):9410-20. doi: 10.1021/jp071946z. Epub 2007 Jul 13.

Abstract

The influence of three well-known disaccharides, namely, trehalose, maltose, and sucrose, on some structural and dynamical properties of lysozyme has been investigated by means of molecular dynamics computer simulations in the 37-60 wt % concentration range. The effects of sugars on the protein conformation are found to be relatively weak, in agreement with the preferential hydration of lysozyme. Conversely, sugars seem to increase significantly the relaxation times of the protein. These effects are shown to be correlated to the fractional solvent accessibilities of lysozyme residues and further support the slaving of protein dynamics. Moreover, a significant increase in the relaxation times of lysozyme, sugars, and water molecules is observed within the studied concentration range and may result from the percolation of the hydrogen-bond network of sugar molecules. This percolation appears to be of primary importance to explain the influence of sugars on the dynamical properties of lysozyme and water.

摘要

通过分子动力学计算机模拟,研究了三种著名的二糖,即海藻糖、麦芽糖和蔗糖,在37 - 60 wt%浓度范围内对溶菌酶某些结构和动力学性质的影响。发现糖类对蛋白质构象的影响相对较弱,这与溶菌酶的优先水合作用一致。相反,糖类似乎显著增加了蛋白质的弛豫时间。这些效应与溶菌酶残基的部分溶剂可及性相关,并进一步支持了蛋白质动力学的从属关系。此外,在所研究的浓度范围内,观察到溶菌酶、糖类和水分子的弛豫时间显著增加,这可能是由于糖分子氢键网络的渗滤作用。这种渗滤作用对于解释糖类对溶菌酶和水的动力学性质的影响似乎至关重要。

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