Excoffier Laurent
Computational and Molecular Population Genetics Laboratory, Zoological Institute, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland.
Mol Ecol. 2004 Apr;13(4):853-64. doi: 10.1046/j.1365-294x.2003.02004.x.
It has been long recognized that population demographic expansions lead to distinctive features in the molecular diversity of populations. However, recent simulation results have suggested that a distinction could be made between a pure demographic expansion in an unsubdivided population, and a range expansion in a subdivided population, both leading to a large increase in the total number of the individuals. In order to better characterize the effect of a range expansion, I introduce a simple model of instantaneous expansion under an infinite-island model, under which I derive the distribution of the number of mutation differences between pairs of genes (the mismatch distribution), the heterozygosity, the average number of pairwise difference, and the fixation index F(ST). These derivations are checked against simulations, and are shown to lead to results qualitatively similar to those one would obtain after a range expansion in a 2-dimensional stepping-stone model. I then apply these results to estimate immigration rates in hunter-gather and post-Neolithic human populations from patterns of mitochondrial (mtDNA) diversity. Potential problems with this estimation procedure are also discussed.
长期以来,人们已经认识到人口的人口统计学扩张会导致群体分子多样性的独特特征。然而,最近的模拟结果表明,在未细分群体中的纯粹人口统计学扩张与细分群体中的范围扩张之间存在区别,这两种情况都会导致个体总数大幅增加。为了更好地描述范围扩张的影响,我引入了一个在无限岛屿模型下的瞬时扩张简单模型,在此模型下,我推导了基因对之间突变差异数量的分布(错配分布)、杂合度、平均成对差异数量以及固定指数F(ST)。通过模拟检验这些推导结果,结果表明其定性结果与在二维 stepping-stone 模型中范围扩张后所获得的结果相似。然后,我应用这些结果,根据线粒体(mtDNA)多样性模式估计狩猎采集人群和新石器时代后人群的移民率。还讨论了这种估计方法存在的潜在问题。